Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq89 178 3e-39 seq91 134 3e-26 seq117 107 4e-18 seq238 93.3 9e-14 seq6 84.2 5e-11 >seq89 Length=200026 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | ||||| ||||| |||||||||||||||| Sbjct 22918 CCACCACGGAGCCGAAGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGAC 22977 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || || || || || || || | ||| || || || ||| Sbjct 22978 AGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGA 23037 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||||| || ||| |||| ||||| || |||| ||| || Sbjct 23038 ATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACC 23097 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct 23098 TCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACGAAGATCTGCATT 23145 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | || ||| |||||||| |||||||||| Sbjct 23146 CCACCACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGAC 23205 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || || || ||||| | ||||| |||||| ||| Sbjct 23206 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGA 23265 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||||| || ||| | ||||| ||||| || | ||||||| Sbjct 23266 ATTCCCTCCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACT 23325 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | ||||| || || |||||||| Sbjct 23326 TCGAGTGTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| | ||| || || || ||||||||||| | Sbjct 23373 ACCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 23432 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||||||| || ||||| || Sbjct 23433 CAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGG 23492 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || |||||||||| || || | ||||||||||| || || || Sbjct 23493 AATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAAC 23552 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 23553 CTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 23590 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || |||| || | || ||| || ||||| |||||||| | Sbjct 23666 ACCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGA 23725 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || |||||||||||||| || || || || Sbjct 23726 GAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 23785 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||||| || ||| | ||||| ||||| || | || || Sbjct 23786 AATGCCTTCCTTGTCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAAC 23845 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || |||||||| ||||| || |||| Sbjct 23846 CTCCAGAGTGATGGTCTTGCCAGTCA 23871 >seq91 Length=644249 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| || || ||||||||||| || || || || |||||||| Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || ||||| || || ||||||||||| |||||||||| || ||| | ||| Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | ||||| ||||| || || ||||||||||||| ||||| ||||| Sbjct 240137 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGAA 240079 >seq117 Length=965375 Score = 107 bits (118), Expect = 4e-18 Identities = 177/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCC--TTGCC 230220 ||| |||| |||| || |||| ||| ||||| ||| | || || | || ||||| Sbjct 188145 ATCATCACTGAAGCTGTCGCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCC 188086 Query 230221 GTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTA 230280 ||| ||||||||||| | |||| ||| | || |||||||| || || |||||| | Sbjct 188085 --CTTCTCGGCATGAATTCCAATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGAC 188028 Query 230281 TTTTCGTGGCGCTAGGGTACGAGAAAGTG-TATAACTCCAAGAACCCCTTCGCTTTTATG 230339 | | || ||||| || || || |||| || ||||||| ||||| |||| || ||| Sbjct 188027 TCCTGGTTGCGCTTGGCAAC-AGCAAGTACTACAACTCCACCAACCCATTCGACTTCATG 187969 Query 230340 GAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAA 230399 || ||| || || || ||||| ||||||||||| ||||| || |||| || || Sbjct 187968 GACAACATCTCCCTGGCTGGTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAG 187909 Query 230400 AGGCCCGGTGT 230410 | | | ||||| Sbjct 187908 AAGGCTGGTGT 187898 >seq238 Length=427615 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | || || || |||||||||||||| | Sbjct 50105 ACCACCACGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 50046 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || || || ||||||| || || ||||| || Sbjct 50045 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGG 49986 Query 282992 AATACCCTCCTTGTCT 283007 || |||||||||||| Sbjct 49985 GATGCCCTCCTTGTCT 49970 >seq6 Length=280615 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 315607 ACGGCCCAGTTTTCGACACACACGTTTTTAACAAATTCGCCACTGTGACTAATCACCACC 315666 ||||||||| ||| || || ||| | | || ||| || ||| | || | || Sbjct 236904 ACGGCCCAGACTTCCTCAGTCAGGTTCTCAGTGAACTCGGCAGAGTGGGTGATGATGACA 236963 Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| |||| | |||| | || ||||||||| || ||||| | Sbjct 236964 ACACCACCCTCGAAGGTCTTGATAGCCTTGGACAGAGCACCGAGAGAGTCACGGTCAAGG 237023 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 |||| || ||||||||||||||||||||||| || | ||||| |||| || | | Sbjct 237024 TAGTTAGTAGGCTCATCAAGAACGATGACGTGAGGACGCTGCCA-CGAGCAAGCAGCAAG 237082 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATG 315833 |||| ||| | || ||||||||||| || || |||||||| || Sbjct 237083 GACGACCTTGACACGCTGACCACCAGACAGACCGCGCATGCGAGAGTG 237130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735350943698