Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq89 143 2e-29 seq91 95.1 9e-15 >seq89 Length=200026 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| |||||||| || ||||||||||| || | || || | || || Sbjct 22936 ACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCA 22995 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | |||||||||||||| ||| | |||||||| ||| Sbjct 22996 AGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGG 23055 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || || |||| ||||| ||||| | || || |||||| Sbjct 23056 ATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTT 23115 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||||||||| ||||| Sbjct 23116 CCCGTAAGGGTCTTCACGAAGATCTGCAT 23144 Score = 116 bits (128), Expect = 3e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||||| ||||| ||||| |||| ||| || |||| ||| Sbjct 23685 ACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCC 23744 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||||||||||||||| | ||| | |||||||| || Sbjct 23745 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGA 23804 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || ||| | |||||||||| ||| || ||||||| || || ||||| Sbjct 23805 ATCTT-TGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTT 23863 Query 44308 TCCCGT 44313 || || Sbjct 23864 GCCAGT 23869 Score = 113 bits (124), Expect = 3e-20 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| || || || || ||| |||||| || |||||||| || Sbjct 23370 CATACCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 23429 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| || |||||||| || || ||||||||||||||||| || | Sbjct 23430 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGG 23489 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | ||| ||||| ||| ||||| ||| || ||| | || |||||| || Sbjct 23490 GGGAATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGT--CGATAGTGTCGCTAGAC 23547 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 || ||||| | || || ||||| || ||||||||||| |||| Sbjct 23548 TCAACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 23590 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||| | || |||||||| || ||||||||||| ||||| || Sbjct 23142 CATTCCACCACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTC 23201 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || |||||||| || || ||||| | || ||||| || | Sbjct 23202 AGACAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGG 23261 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| || | || ||| | |||||||||| ||||| Sbjct 23262 GGGAATTCCCTCCTTATCTTGAATCTT-TGTCTTAACGTTGTCGATGGTGTCGGAGGATT 23320 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||||||||| ||||||||||| ||||| ||||| Sbjct 23321 CGACTTCGAGTGTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 >seq91 Length=644249 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || || | || || |||||||| || ||||||| Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 | | ||||||||| || | || | || ||||| ||| ||||| ||| | | Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGT 240140 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | ||||||||| || || || || | ||||| ||||| ||||| ||||||||||||| Sbjct 240139 CGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGA 240080 Query 44328 AG 44329 || Sbjct 240079 AG 240078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989140821079