Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq89 158 3e-33 seq91 131 4e-25 >seq89 Length=200026 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || ||||| ||||| || ||| ||| ||| Sbjct 23369 CAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCCGAC 23310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||||||| || || || ||||| || || ||||||||| Sbjct 23309 ACCATCGACAACGTTAAGACAAAGATTCAAGATAAGGAGGGAATTCCCCCTGACCAGCAA 23250 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||||| || ||||| | || || | || || || || Sbjct 23249 CGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAATATC 23190 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || || || |||||| | |||| Sbjct 23189 CAAAAGGAATCTACCCTTCACCTTGTTCTCCGACT 23155 Score = 116 bits (128), Expect = 9e-21 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCA 177987 |||| || || ||||| || || || |||||||||||||| || ||| ||||| | Sbjct 23590 TCGTCAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGC---GACACTA 23534 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 |||| || ||||| |||||| ||||| || || || || || ||||||||||| || Sbjct 23533 TCGACAATGTCAAGACAAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTT 23474 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | |||||||| || || ||||| || || || | || || |||| || ||| | || | Sbjct 23473 TGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGA 23414 Query 178108 AAGAATCAACACTGCATCTTGTTTTG 178133 | || || || || ||||| || ||| Sbjct 23413 AGGAGTCCACCCTCCATCTCGTCTTG 23388 Score = 109 bits (120), Expect = 1e-18 Identities = 137/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| || ||| ||||||||||| ||||| || | Sbjct 23869 ACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCCGACACCATCGACAACGTTAAGACA 23810 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||| || ||||| || ||||| || | ||||| || || || Sbjct 23809 AAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAAG 23750 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || || |||| || || |||| || ||||| || || || Sbjct 23749 CAGCTGGAGGACGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAATCTACTCTCCA- 23691 Query 178125 CTTGTTT 178131 |||| || Sbjct 23690 CTTGGTT 23684 >seq91 Length=644249 Score = 131 bits (144), Expect = 4e-25 Identities = 139/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 |||||||| || || || || || || || |||||||| || || ||| |||||| Sbjct 240079 TTCGTGAAGACCCTGACGGGTAAGACTATTACCCTCGACGTCGAGTCGAGC---GACACC 240135 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| |||||| |||||||| || || ||||| ||||||||||| || Sbjct 240136 ATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGT 240195 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 |||||||| || || || |||||||| ||||| | ||||| ||| || ||| |||| Sbjct 240196 CTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTGAGCGACTACAACATCCAG 240255 Query 178107 AA 178108 || Sbjct 240256 AA 240257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726773654678