Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq89 150 2e-31 seq238 127 2e-24 seq91 118 1e-21 >seq89 Length=200026 Score = 150 bits (166), Expect = 2e-31 Identities = 166/219 (76%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || ||||| || ||| ||||||||||||||| |||||||| Sbjct 23374 CCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 23433 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || ||||| |||| ||||| ||||||| |||| Sbjct 23434 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGA 23493 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| ||| ||| || | || | ||||||||| ||||| | Sbjct 23494 ATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCG--ATAGTGTCGCTAGACTCAA 23551 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || ||||| |||| Sbjct 23552 CCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 23590 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || || || |||||||| || || ||||||||| Sbjct 23667 CCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAG 23726 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| || || |||| ||||| || || | ||| Sbjct 23727 AGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGA 23786 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | |||| | |||| | | | |||||| ||||| || Sbjct 23787 ATGCCTTCCTTGT-CTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAAC 23845 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||||| || || || || || |||| Sbjct 23846 CTCCAGAGTGATGGTCTTGCCAGTCA 23871 >seq238 Length=427615 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||| || ||||| || ||||||||| ||||| ||||| Sbjct 50108 ACCACCACCACGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 50049 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| |||||||| |||| |||||||||||||| ||||| ||||||||||| ||||| | Sbjct 50048 GGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGG 49989 Query 41752 GGGAACGCTCTCCTTGTC 41769 || | || ||||||||| Sbjct 49988 AGGGATGCCCTCCTTGTC 49971 >seq91 Length=644249 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| || || || | || ||||||||||| || || || | Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||| ||||||| ||| | || |||||||||| ||| ||| ||| ||| | Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTT-GACGTTG 240141 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||||||||||| || || | || || || ||||||||||| ||||| ||| Sbjct 240140 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACG 240081 Query 41852 AA 41853 || Sbjct 240080 AA 240079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302341484400