Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20aucupariae_20[genbank_20GCA_5F002162555.1_202017-05-31] 505 sequences; 54,948,206 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8 232 8e-56 seq3 118 1e-21 >seq8 Length=1964072 Score = 232 bits (256), Expect = 8e-56 Identities = 1301/2066 (63%), Gaps = 49/2066 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || |||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 142064 GTAAATTGAATAGGGGCCGAAGCAGCCATGGTACGTAAATAGTACATTCCGGTCTTCAAA 142005 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || || |||| || ||| |||||| ||| | ||| | ||||| || Sbjct 142004 CCCAGTTTCCAACCAGCAAAGTGCATAGATGTAATCTTGCCCATTGTAGGATCCTTCATG 141945 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| ||||| ||||||||||||||| || | || |||||||| | | | Sbjct 141944 TGAATGTTCATCGATTGGGATTGATCGATGAAGGCACCACGATCGGCAGCCATCTGAACG 141885 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || || | ||||||||||| ||| || |||| ||| ||||| |||| | Sbjct 141884 ATTGTTCGCTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGATA 141825 Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | || || || ||||| ||||| | || || | ||||| || | || | Sbjct 141824 TTAGGAATGTTTTGGATGGATCCGCCATCAGCGATGATACGGTTCTTCATGTTGTCCGAC 141765 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | ||| | | | || || ||||| || ||||| ||||||||| Sbjct 141764 CAAAGACCCATATCGACGAGGTCCTTGAGAAGCCATGGATTGACGACTTGGAATTCTCCA 141705 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | | || | |||| |||||| || || || ||||| | | | ||||| || Sbjct 141704 GCAAGAACACGACGAGAGTAAATGTTTGAAGTGTAAGGTTCGAAACATTCATTGAAACCA 141645 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||| | || ||||| ||||| ||||| || | | | || | || ||| Sbjct 141644 AGAATTTGGGATGTGCTAGCAGTTGGCATGGGTGCAACGAGGAGAGAGTTGCGAACTCCG 141585 Query 53285 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 53344 | | |||| | || | || ||||||| ||| | ||| ||| ||| Sbjct 141584 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCACTAGGTGTAACACCC 141525 Query 53345 NNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTA 53400 ||| || ||| || ||||| | | ||| |||| || || || Sbjct 141524 CACATGTCGTATTGGAGTTCACCCTTGGAGACTGGAG----AGCCTTCATAGGTTTCATA 141469 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 53459 ||| || || || || | || || | || || ||| | | || ||||| | Sbjct 141468 TGGACCAAGCTCCTTTGCAATCTCGACGGATGAGGTC-AAGGCAGCATGGTAGATGGTCT 141410 Query 53460 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG-- 53517 |||| || | | || || | | ||||| | || |||||| | | |||| Sbjct 141409 CGAAAATTTGGATGTTGAGGTGCTTAGCTTCTGGAGAGTCGAATGGA-AGTCGGAGAGCC 141351 Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 || ||| || || || | || |||||||| | | ||||||||| || | ||| Sbjct 141350 AAGAAA-GCATCAGCAAGACCCTGAACACCGACAGCGATAGGTCGGTGACGGAAATTGCT 141292 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637 | | |||||| ||| || ||||| || || | || || || || | ||||| || Sbjct 141291 CTTCTTGGCTTCTTGAACTGGGTAATAGTTGATGTTGATGATCTTGTTCAAATTTCTAAC 141232 Query 53638 AATTACTT---TGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-----TATT 53689 || || | ||||| || | || ||| | |||||| | ||| || | || Sbjct 141231 AACAACCTGAGTGACC---TCGTGAAGCTTGTGGAAATCATAAGTTCCCTCATTCATGTT 141175 Query 53690 -ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||||| | ||| || ||||| |||| |||||| || ||||||| | | | Sbjct 141174 GACAAAAGTTGGCAAAGCGATAGAAGCCAAGTTACAACAAGCAACCTCATCTGGCGCAGA 141115 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 || | | ||||| ||||| | || | || || || | || | ||| || Sbjct 141114 GTACTCGACAATCTCTGTGCATAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTT 141055 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 |||||| ||||| || ||||| || ||||| ||||| || | || || || | |||| Sbjct 141054 ACTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCCGTCTCGGTTTGGGC 140995 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT-- 53926 || | ||| | | ||| | ||||||| || || ||| | ||| | Sbjct 140994 CTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCAGC 140938 Query 53927 CTT-TCGTATAGTGT-ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAG 53984 ||| ||||| | | | ||| | || ||||| || || |||||| |||| || | Sbjct 140937 CTTCTCGTA-ACTCTCATAGAGAGCCTCGAACTCTTCGCCATAAACATCTGCCAAACCCG 140879 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 ||||||| | || ||||| | | ||||||||| | | | || || |||||||| | Sbjct 140878 GACATTCGTTGGGGCACATAAGAGTCCACTCTCCATTCTTTTCAACACGCTTCATAAATA 140819 Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 54104 ||||||||||||| | || || ||||| | | | | ||| || || || || Sbjct 140818 GATCAGGAATCCACAAGGCGTAGAAGAGATCACGTGCACGAACTTCTTCCTTGCCATGAT 140759 Query 54105 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCA 54164 |||| ||||| || ||| | | || |||| |||||| ||||| | ||| || | | Sbjct 140758 TCTTGCGCAGATCAAGAAACTCGAAAACGTCAGCATGCCATGGTTCAAGGTAAATAGCGA 140699 Query 54165 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224 | | ||||| || || || || || ||||| | ||||| |||||||| || |||||| Sbjct 140698 AAGCACCAGGTCGCTTATTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTC 140639 Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 | ||| || | ||| || ||||| || ||||| |||| ||| || ||| | | Sbjct 140638 GGAGCATAGGGACAATGCCGTTGGAGTTTCCGTTGGTGCCGGCGATGTATGCACCAGTAG 140579 Query 54285 CACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 |||| || | || ||| ||||| || || || || | || || || | || || Sbjct 140578 CACGGATTCTGTGAACGTTG--AGACCAATACCACCGGCATTCTTCGAAATCATGGCACA 140521 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 || || || || || || || || ||||| || ||| |||||| | || || || Sbjct 140520 AATCTTCAAAGTGTCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCA 140461 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | ||| | |||||||||| || | || || || || || || || Sbjct 140460 TGATGAAAGTTGTGCTTGTGGAGTTCCCGCAGAGAAGAGTGTCGGGGAGGCATGGGTGAA 140401 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | || | || | | ||||| ||||||||||| || ||||| |||||| Sbjct 140400 GTACTTGTTTGACATCAAGTTGTATGTCTCGATAGCACTCTCAATATCATCACCATGAAT 140341 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || |||||||| | ||| || || || | ||| | | ||| | | Sbjct 140340 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCGAGGCG 140281 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || | ||| ||| | || | ||| || || || || || | ||| |||||||| || Sbjct 140280 TAGAAGGTATGATCTCTCGAGAGTCTTGAACCCGAAGTATTGGTAGTTGAAGTCTCGGTC 140221 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA---T 54699 || | |||| | |||||||||| |||| || | | | || ||| | |||| | Sbjct 140220 ATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC-GCAT---TCGTAAGTTT 140165 Query 54700 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCT 54758 |||| ||| || ||||| | | |||||| | || || || | ||||||| Sbjct 140164 CCTTGCTAATCATAGGAGATGGGGTGCCATTTCTTGGGTTTGTGTATTGGTATAAATCGC 140105 Query 54759 TCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAG 54818 || || | |||| |||| || |||| |||||| || || || || || || | || Sbjct 140104 GGATAACGTGGGAAAATTGTTTCTTGGTTTGTTTGTGGAGGTTCGAGACAGCAATACGAG 140045 Query 54819 CGGCTAGAATGGCATAATCCGGATGT 54844 | ||||||||||||||||| |||||| Sbjct 140044 CAGCTAGAATGGCATAATCTGGATGT 140019 >seq3 Length=2715537 Score = 118 bits (130), Expect = 1e-21 Identities = 229/334 (69%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 24357 GTCTCTATAGCATTAAAGAGATA-Gtttttt-tCATTACTATCTTTAACATATGTATCAA 24414 || || ||||| || ||||| || || |||| | || || | || | |||||| || | Sbjct 2405951 GTGTCAATAGCGTTGAAGAGGTATGTCTTTTGTGCTTGCT--CCTTGATATATGTGTCGA 2406008 Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 | | |||| || |||| ||||||||||| || || ||||| || |||||||| | Sbjct 2406009 TGAGAAGAGAGTATGTTTCAGAATGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGC 2406068 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 |||| ||||| | || || ||||| || ||||| ||| | || || ||||| || | Sbjct 2406069 ATCTTGCCTCTGGGATTTGAACTTCACCACTGAATCGCTCTACCAAGTTCTCATTGACAA 2406128 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 |||||||| ||||| || || || | || || || || || || || Sbjct 2406129 TTCCGTCAGATGCTGCGAAGAATGCGAGAACGTGCGAGATGAAGTAGCGCTCATCATCAT 2406188 Query 24595 TTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | ||| || ||||| || | | ||| || || | ||| | ||||| | ||||| | Sbjct 2406189 TGAGTCTGTTGTTCCAGTCGTGAAGATCCTTTGACAAATCGATCTCTTCTGCGGTCCAGA 2406248 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | |||||||||||||| || ||||| | |||||| Sbjct 2406249 AAGATGCCTCTGCCTTCTTGTACATCTGCCAGAT 2406282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717852132400