Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20aucupariae_20[genbank_20GCA_5F002162555.1_202017-05-31] 505 sequences; 54,948,206 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 230 3e-55 seq3 163 4e-35 >seq8 Length=1964072 Score = 230 bits (254), Expect = 3e-55 Identities = 1303/2074 (63%), Gaps = 65/2074 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || |||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 142064 GTAAATTGAATAGGGGCCGAAGCAGCCATGGTACGTAAATAGTACATTCCGGTCTTCAAA 142005 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || || |||| || ||| |||||| || | ||| | ||||| || Sbjct 142004 CCCAGTTTCCAACCAGCAAAGTGCATAGATGTAATCTTGCCCATTGTAGGATCCTTCATG 141945 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| ||||| ||||||||||||||| || | || |||||||| | | | Sbjct 141944 TGAATGTTCATCGATTGGGATTGATCGATGAAGGCACCACGATCGGCAGCCATCTGAACG 141885 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || || | ||||||||||| ||| || |||| ||| ||||| |||| | Sbjct 141884 ATTGTTCGCTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGATA 141825 Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || || |||||||| ||||| | || || | ||||| || | || | Sbjct 141824 TTAGGAATGTTTTGGATGGATCCGCCATCAGCGATGATACGGTTCTTCATGTTGTCCGAC 141765 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | ||| | | | || || || || || ||||||||||||||| Sbjct 141764 CAAAGACCCATATCGACGAGGTCCTTGAGAAGCCATGGATTGACGACTTGGAATTCTCCA 141705 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | | || | |||| |||||| || || || ||||| | | ||||| || Sbjct 141704 GCAAGAACACGACGAGAGTAAATGTTTGAAGTGTAAGGTTCGAAACATTCATTGAAACCA 141645 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | |||||| | || ||||| ||||| ||||| || | | | || | || ||| Sbjct 141644 AGAATTTGGGATGTGCTAGCAGTTGGCATGGGTGCAACGAGGAGAGAGTTGCGAACTCCG 141585 Query 62523 TATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNN 62582 | | |||| | || | | ||||||| ||| | ||| ||| |||| Sbjct 141584 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCACTAGGTGTAACACCC 141525 Query 62583 NNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCATA 62638 ||||| || ||| || ||||| | | ||| |||| || ||||| Sbjct 141524 CACATGTCGTATTGGAGTTCACCCTTGGAGACTGGAG----AGCCTTCATAGGTTTCATA 141469 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAA-CTCGCC--------TCTAATGCACCGTAATA 62689 ||| || |||| ||| ||| |||| | || || ||| | | || Sbjct 141468 TGGACCA--------AGCTCCTTTGCAATCTCGACGGATGAGGTC-AAGGCAGCATGGTA 141418 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 ||||| || || || | | || || | | ||||| || || |||||| | | Sbjct 141417 GATGGTCTCGAAAATTTGGATGTTGAGGTGCTTAGCTTCTGGAGAGTCGAATGGA-AGTC 141359 Query 62750 TAAGAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 |||| || ||| || || || | || |||||||| | | ||||||||| || | Sbjct 141358 GGAGAGCCAAGAAA-GCATCAGCAAGACCCTGAACACCGACAGCGATAGGTCGGTGACGG 141300 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 ||| | | |||||| ||| || ||||| || || | || || || || | | Sbjct 141299 AAATTGCTCTTCTTGGCTTCTTGAACTGGGTAATAGTTGATGTTGATGATCTTGTTCAAA 141240 Query 62868 TTTCTGACAATTACTT---TGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCA 62921 ||||| |||| || | ||||| || | || ||| | |||||| | || | || Sbjct 141239 TTTCTAACAACAACCTGAGTGACC---TCGTGAAGCTTGTGGAAATCATAAGTTCCCTCA 141183 Query 62922 TCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTA 62978 | || ||||| | ||| || | ||| |||| ||||| || ||||||| Sbjct 141182 TTCATGTTGACAAAAGTTGGCAAAGCGATAGAAGCCAAGTTACAACAAGCAACCTCATCT 141123 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | || | | ||||| ||||| | || | ||||| || | || Sbjct 141122 GGCGCAGAGTACTCGACAATCTCTGTGCATAAGTTGGAGCTGCGAATAGTACCAAGGTTC 141063 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 | ||| |||||||| ||||| || ||||| || ||||| ||||| ||| | || || || Sbjct 141062 TTTTGGTTACTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCCGTCTCG 141003 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 63158 | || | || | ||| | | ||| | | ||||||| || || ||| | | Sbjct 141002 GTTTGGGCCTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGAC-C 140947 Query 63159 CTTTCT---CTT-TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214 ||| | ||| ||||| ||| | |||||||| || || |||||| | Sbjct 140946 CTTGCCAGCCTTCTCGTAACTCTCATAGAGAGCCTCGAACTCTTCGCCATAAACATCTGC 140887 Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 ||| | |||||||| | || ||||| | | ||||||||| | | | || || || Sbjct 140886 CAAACCCGGACATTCGTTGGGGCACATAAGAGTCCACTCTCCATTCTTTTCAACACGCTT 140827 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 |||||| |||||||||||||| | || || ||||| | || | | ||| || || Sbjct 140826 CATAAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCACGTGCACGAACTTCTTCCTT 140767 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || |||||| ||||| || ||| | | || |||| |||||| ||||| | ||| Sbjct 140766 GCCATGATTCTTGCGCAGATCAAGAAACTCGAAAACGTCAGCATGCCATGGTTCAAGGTA 140707 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 || || | | | ||||| || || || || || ||||| | ||||| |||||||| || Sbjct 140706 AATAGCGAAAGCACCAGGTCGCTTATTACCACCTTGATCAACATATCTGGCGGTGTTGTT 140647 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 |||||| | ||| || | ||| ||||| || | || ||||| |||| ||| || | Sbjct 140646 GAAAACTCGGAGCATAGGGACAATGCCGTTGGAGTTTCCGTTGGTGCCGGCGATGTATGC 140587 Query 63515 TCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 ||| | ||||| || | || ||| ||||| || || || || | || || || Sbjct 140586 ACCAGTAGCACGGATTCTGTGAACGTTG--AGACCAATACCACCGGCATTCTTCGAAATC 140529 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | || || || || ||||| || || || || || || || || |||||| | Sbjct 140528 ATGGCACAAATCTTCAAAGTGTCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATG 140469 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 || || || || | ||| | | |||||||||| || | || || || || Sbjct 140468 AGGAAGCATGATGAAAGTTGTGCTTGTGGAGTTCCCGCAGAGAAGAGTGTCGGGGAGGCA 140409 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 || || || | || | || | | ||||| ||||| ||||| || ||||| Sbjct 140408 TGGGTGAAGTACTTGTTTGACATCAAGTTGTATGTCTCGATAGCACTCTCAATATCATCA 140349 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 |||||| || || || |||||||| | ||| || || || | ||| ||| |||| Sbjct 140348 CCATGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCA 140289 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 | | | | ||| ||| | || | ||| || || || || || | ||| ||| Sbjct 140288 TCGAGGCGTAGAAGGTATGATCTCTCGAGAGTCTTGAACCCGAAGTATTGGTAGTTGAAG 140229 Query 63873 TCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATG 63932 ||||| || || | |||| | || ||||| | |||| || | | | || | | Sbjct 140228 TCTCGGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC----GCATTC 140173 Query 63933 GTAA---TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63988 |||| | |||| ||| || ||||| | | |||||| | || || || | | | Sbjct 140172 GTAAGTTTCCTTGCTAATCATAGGAGATGGGGTGCCATTTCTTGGGTTTGTGTATTGGTA 140113 Query 63989 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 |||||| || || | |||| |||| || |||| ||||| || || || | || Sbjct 140112 TAAATCGCGGATAACGTGGGAAAATTGTTTCTTGGTTTGTTTGTGGAGGTTCGAGACAGC 140053 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64082 || | || ||||||||||||||||| |||||| Sbjct 140052 AATACGAGCAGCTAGAATGGCATAATCTGGATGT 140019 >seq3 Length=2715537 Score = 163 bits (180), Expect = 4e-35 Identities = 348/514 (68%), Gaps = 7/514 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||||| || | || |||||||| || ||||| || ||||||| || || Sbjct 2405376 TTTTGGTAATCACCAACTCTCTTCTCGAAAAAGTTGGTTTTGCCGGCCAATGAGATGTTC 2405435 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||||||||| || || |||| | |||||| ||| | ||||| | | Sbjct 2405436 TCCATGAAATCGAATGGGTTGGCAGACCTGTAAAATTTCTCGTTGCCCAAAGCGATGAGA 2405495 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCA-TTTCACAATTCATTCCTATGAG 33469 | | ||| || ||||| || || ||| ||||| | ||| | ||||| |||| ||| Sbjct 2405496 AGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGATTCGC-GTTCATGCCTAAGAG 2405554 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | |||||||||| | || | |||||||| || || || || | || || | Sbjct 2405555 AGCACATGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCGACGGCTTCAGTGATGAC 2405614 Query 33530 AAATCTAACGG-TTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | | ||||| || ||| | || || || | ||| ||| | | ||||||| Sbjct 2405615 ATCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAAAAGAGGAGGCATGCGA 2405673 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | ||| ||| ||||| ||||| | || | |||||| || || || ||||||| || Sbjct 2405674 AGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTAAGTCCGGCCA 2405733 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | || |||||||| || ||||| || || || ||||| |||||||| ||||| || |||| Sbjct 2405734 TGAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAGGATCCGGAGAAGAAAATACCTT 2405793 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 33765 | || ||||| || || | || | | || | | | |||| || ||||||| Sbjct 2405794 CAACGGCAGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGTTCTTGTCTTGAATCCACT 2405853 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 | |||||| |||||||||||||| | ||||| Sbjct 2405854 TGACAGCCCAGTCGGCCTTCTTTTTAATGCAAGG 2405887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813624276400