Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20aucupariae_20[genbank_20GCA_5F002162555.1_202017-05-31] 505 sequences; 54,948,206 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq27 170 2e-36 seq2 109 4e-18 seq60 91.5 1e-12 >seq27 Length=788475 Score = 170 bits (188), Expect = 2e-36 Identities = 400/596 (67%), Gaps = 7/596 (1%) Strand=Plus/Minus Query 549989 GTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGT 550048 |||| ||| ||||| ||||| || ||||| || |||||| ||| | | | ||| | Sbjct 606482 GTAG-TATTGGTATCGATTTGGGTACCACCTACTCTTGTGTGGGTATCTTCCGTGATGAT 606424 Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 | | | |||||||| ||||| || ||||| ||| | || || ||||| | ||| ||||| Sbjct 606423 AGAATCGAAATTATCGCCAACGACCAAGGAAACCGTACCACCCCATCCTTCGTTGCTTTC 606364 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || || || || | | | | || ||||| || || |||||| | | || || | | Sbjct 606363 ACAGATACCGAGCGTCTGATCGGAGATGCCGCCAAGAATCAAGTCGCCATGAACCCAATC 606304 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCA 550227 || || | || |||||||| ||||| ||||| | ||||| | ||| | ||||| Sbjct 606303 AACACCGTCTTCGATGCTAAGCGTTTGATTGGTCGCAAGTTCGCA-GATGCTGAGGTTCA 606245 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 || ||||||||||| | || ||| | | || | | |||||| || || || Sbjct 606244 AGCCGATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGGTGGAAAGCCAGTCATCGA 606185 Query 550288 AG-CTACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | | | | | |||| | || ||||| |||||||| |||| || || ||| | Sbjct 606184 GGTCGAGT--TCAAGGGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATC 606127 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 || | || |||| | | || || |||| | ||| | |||| | || || Sbjct 606126 TTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGTGGAACTGTTAACAACGCTGTC 606067 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | || || ||||| || || | || |||||||||||||| ||||| || ||||| | Sbjct 606066 GTCACAGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCCACTAAGGACGCTGGTCTC 606007 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| || Sbjct 606006 ATTGCTGGTCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTAC 605947 Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | || || | | ||| || | ||| || |||||||| ||| ||| || Sbjct 605946 GGTTTGGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 605891 >seq2 Length=2834403 Score = 109 bits (120), Expect = 4e-18 Identities = 118/155 (76%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | ||||| || ||||| ||||| || || || ||| || Sbjct 2396276 GTTGGGCAAGAAGGTCTCAAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 2396217 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||||||| || |||||||| ||||| || ||||| || || ||||| ||||| Sbjct 2396216 ACGTCAAGCTACCAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATCATCAA 2396157 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| |||||||| |||| || || |||| Sbjct 2396156 CGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 2396122 >seq60 Length=53878 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || ||||| || || || || ||||||||||||||||| |||| Sbjct 27939 ATGCCGTCGTTACTGTTCCCGCATACTTCAACGATTCCCAACGTCAAGCTACTAAGGATG 27880 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| || | || || || | || ||||||| || ||||||||||| | Sbjct 27879 CTGGTCAAATTGCCGGTTTGAACGTCCTCAGAGTTGTCAATGAGCCAACTGCTGCTGCTC 27820 Query 550518 TTGCATATGG 550527 | || || || Sbjct 27819 TCGCTTACGG 27810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029269293322450