Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20aucupariae_20[genbank_20GCA_5F002162555.1_202017-05-31] 505 sequences; 54,948,206 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq17 123 2e-23 seq27 111 1e-19 seq1 89.7 5e-13 >seq17 Length=1064257 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| ||||||| || || ||| |||||| || ||||| ||||| Sbjct 789781 ACCACCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTC 789722 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| || || || | || || || ||||| || ||||| |||| ||||||||||| | Sbjct 789721 GGAAAGAGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCGGG 789662 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 || | | |||||||||| ||| || ||| || | || | ||||| ||| Sbjct 789661 TGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCCGAAGAC 789604 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| | || || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 789603 TCAACCTCGAGGGTGATGGTTTTGCCCGTAAGGGTCTTGACGAAGATCTGCATG 789550 >seq27 Length=788475 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 516455 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAATCGGAA 516396 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| || | |||||| || || || |||| || |||||||| | ||| Sbjct 516395 AGGGTTCTGCCGTCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGGTCAGGTGGA 516336 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | ||| || ||| || || Sbjct 516335 ATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTATCAATAGTATCTGACGATTCTAC 516277 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || ||||| |||| ||||| || || || ||||| Sbjct 516276 TTCTAACGTAATTGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 516229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| ||||| ||||| |||||| |||||||| ||||| Sbjct 515716 CCACCACGAAGGCGGAGCACAAGATGGAGCGTAGACTCCTTTTGAATGTTGTAGTCACTC 515657 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || || ||||| |||||||| |||| ||||||||||| | |||| Sbjct 515656 AAGGTGCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGGGGA 515597 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| ||| ||| ||| | | | || ||||| || || || Sbjct 515596 ATTCCCTCCTTATCTTGGATCTTTGACTT-GACGTTGTCAATGGTATCGCTGGATTCGAC 515538 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || || |||| Sbjct 515537 CTCAAGGGTGATAGTCTTGCCAGTCA 515512 >seq1 Length=6243313 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 85799 TCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGT 85858 ||||||||| || |||||||| || ||| ||| ||| || ||| |||||||| || Sbjct 5359594 TCGTATCGCCCCACGTTCCGGACTTGCCTCCAAACACATGATTGACACTGGCGCCGGTGT 5359535 Query 85859 CATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAAGAGGA 85918 ||||||||||| ||||| ||| | || | | | ||||||||||||||||| |||| Sbjct 5359534 AATCGACGCCGATTACCGGGGACAGGTAAAGGTACTCCTCTTCAACCACGGCGAGAAGGA 5359475 Query 85919 TCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCAT 85957 | | | |||| | ||| || || || ||||| || Sbjct 5359474 TTTTGAGGTGAAGGAAGGCGATCGTGTTGCGCAGTTAAT 5359436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301081706000