Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 seq27 107 2e-18 >seq11 Length=1281110 Score = 113 bits (124), Expect = 4e-20 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065 || |||| ||||| | ||||| || ||||||| |||| || || || |||||||||| Sbjct 151063 TAGTTGTTAAGACACTCACCGGAAAGACCATCACGCTCGAGGTTGAATCTTCTGACACTA 151122 Query 25066 TCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 |||| | || | ||| | || | ||| ||||| || || ||||| || || ||||| || Sbjct 151123 TCGA-TAACGTTAAGTCGAAGATTCAA-GACAAGGAGGGAATTCCCCCCGATCAACAACG 151180 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | || || ||||| || ||| | || |||| |||||| | ||||||||||||||| Sbjct 151181 TTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGCACCCTCTCCGATTACAATATTCA 151240 Query 25184 AAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||| || || || || || || || || Sbjct 151241 GAAGGAATCTACCCTCCACTTGGTCCTTAGACT 151273 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || ||| | ||||| || ||||| Sbjct 151512 ATGCAAATCTTTGTTAAGACTTTGACTGGGAAGACAATTACATTAGAAGTTGAATCGTCA 151571 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| |||| | ||| || || || || || || |||||||| Sbjct 151572 GATACTATTGATAATGTCAAGTCAAAGATTCA-GGATAAGGAGGGTATCCCCCCTGACCA 151630 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || ||||| || || || || || |||| | | || | ||| ||||| Sbjct 151631 ACAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTAGAACACTTTCCGACTACAA 151690 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||| ||| | || || ||||| Sbjct 151691 CATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 151723 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || || || || ||||||||||| | ||||| ||||| |||||| | || Sbjct 150866 GACAAGGAGGGAATCCCCCCCGACCAACAGCGTTTGATTTTCGCCGGAAAACAACTTGAG 150925 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||| || | || ||||| |||||||| || ||||| || ||| | || || Sbjct 150926 GATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAGTCCACTCTCCATCTCGTTCT 150984 >seq27 Length=671268 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| ||||||| |||| || ||||| || Sbjct 264027 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 263968 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || ||||| |||| Sbjct 263967 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACC 263910 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || || || || ||| | || |||| || ||| | ||| |||| Sbjct 263909 AACAGCGATTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACTCTTTCCGACTACA 263850 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || |||||||| ||||| || || || ||| || Sbjct 263849 ACATCCAAAAAGAGTCCACCCTTCACTTGGTGTTA 263815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323532117490