Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31]
846 sequences; 44,684,193 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq11 113 4e-20
seq27 107 2e-18
>seq11
Length=1281110
Score = 113 bits (124), Expect = 4e-20
Identities = 156/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065
|| |||| ||||| | ||||| || ||||||| |||| || || || ||||||||||
Sbjct 151063 TAGTTGTTAAGACACTCACCGGAAAGACCATCACGCTCGAGGTTGAATCTTCTGACACTA 151122
Query 25066 TCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123
|||| | || | ||| | || | ||| ||||| || || ||||| || || ||||| ||
Sbjct 151123 TCGA-TAACGTTAAGTCGAAGATTCAA-GACAAGGAGGGAATTCCCCCCGATCAACAACG 151180
Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183
| || || ||||| || ||| | || |||| |||||| | |||||||||||||||
Sbjct 151181 TTTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGCACCCTCTCCGATTACAATATTCA 151240
Query 25184 AAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|| ||||| || || || || || || || ||
Sbjct 151241 GAAGGAATCTACCCTCCACTTGGTCCTTAGACT 151273
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||||||||| || || | || ||| | ||||| || |||||
Sbjct 151512 ATGCAAATCTTTGTTAAGACTTTGACTGGGAAGACAATTACATTAGAAGTTGAATCGTCA 151571
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | ||| |||| | ||| || || || || || || ||||||||
Sbjct 151572 GATACTATTGATAATGTCAAGTCAAAGATTCA-GGATAAGGAGGGTATCCCCCCTGACCA 151630
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| | | || ||||| || || || || || |||| | | || | ||| |||||
Sbjct 151631 ACAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTAGAACACTTTCCGACTACAA 151690
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| ||| ||| | || || |||||
Sbjct 151691 CATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 151723
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||| || || || || || ||||||||||| | ||||| ||||| |||||| | ||
Sbjct 150866 GACAAGGAGGGAATCCCCCCCGACCAACAGCGTTTGATTTTCGCCGGAAAACAACTTGAG 150925
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| |||||| || | || ||||| |||||||| || ||||| || ||| | || ||
Sbjct 150926 GATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAGTCCACTCTCCATCTCGTTCT 150984
>seq27
Length=671268
Score = 107 bits (118), Expect = 2e-18
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || ||| ||||||| |||| || ||||| ||
Sbjct 264027 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 263968
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || || ||||| ||||
Sbjct 263967 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACC 263910
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || || || || || ||| | || |||| || ||| | ||| ||||
Sbjct 263909 AACAGCGATTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACTCTTTCCGACTACA 263850
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
| || |||||||| ||||| || || || ||| ||
Sbjct 263849 ACATCCAAAAAGAGTCCACCCTTCACTTGGTGTTA 263815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433323532117490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |