Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq29 141 1e-28 seq23 98.7 1e-15 >seq29 Length=608615 Score = 141 bits (156), Expect = 1e-28 Identities = 492/762 (65%), Gaps = 12/762 (2%) Strand=Plus/Plus Query 47991 TTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATG 48050 ||||| ||||| || ||||||||||| ||||| |||| || || | || | || | Sbjct 545390 TTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCTGTCTCGGTTTGCGCCTCGAGA 545449 Query 48051 ATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCT----TTATTATCATGTTC 48106 ||||| | ||||| | |||||| || | ||| || || | | | || Sbjct 545450 ATAGAGTACCAAAGCTTTTGAGCCTTAAT----GGTCTTGCGACCCTTGCCAGCCTTCTC 545505 Query 48107 GTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTC 48166 ||| | ||| | |||||| || || ||||| || | | || || |||||||| Sbjct 545506 GTAACTCTCATAGAGAGCCTCAAACTCCTCGCCATAAACGTCTGCCAAACCCGGACATTC 545565 Query 48167 ATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGG 48226 ||| || ||||| | | ||| || | | |||| || | |||| || | ||| || Sbjct 545566 ATTGGGGCACATAAGGGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGG 545625 Query 48227 TATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT 48285 ||||| | || ||| || | ||| | | | | |||||| || ||| |||| | Sbjct 545626 AATCCACAAGGC-ATAGAAGAGATCACGTGCGCGAACTTCTTCCTTACCATGATTCTTGC 545684 Query 48286 TAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACAC 48345 || ||||| || || | | ||| ||||||||||| || | || | || | ||| Sbjct 545685 GTAGATCAAGGAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCAC 545744 Query 48346 CTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACA 48405 | || || || ||||| ||||| || | ||||||||| || ||||| |||||| | || Sbjct 545745 CAGGGCGCTTGTTACCACCTTGGTCAACATATCTGGCGGTGTTGTTGAAAACTCGGAGCA 545804 Query 48406 TTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTA 48465 | || ||||| || || || | || ||||| || | ||||| ||| |||| | | Sbjct 545805 TGGGAACAATGCCGTTGGAATTTCCGTTGGTACCGGCGATATAGGCACCAGTAGCACGGA 545864 Query 48466 TATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525 | | ||| | ||| |||||||| || | || || || | ||||| || | Sbjct 545865 TTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCA 545924 Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 || || ||||| || || |||||||| ||| |||| | | || || || ||| | Sbjct 545925 AAGTGTCGTAAATACCATCGATACTATCTTCTTTCATGTCGATGAGGAAGCACGAAGAAA 545984 Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT 48645 ||| | || || || | | || | |||||| || ||||| |||| | || | Sbjct 545985 GTTGTGCCTGTGGGGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGT 546044 Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATA 48704 ||| | || || ||||| ||||| || || ||||| || | || ||||| | Sbjct 546045 TTGACATTAAATTGTATGTCTCAATGGCACTCTCAATATCATCACCG-TGAATACCAACC 546103 Query 48705 GATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 | |||||||| | ||| | ||| || | ||| ||| |||| Sbjct 546104 GCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTG 546145 >seq23 Length=743066 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/261 (69%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| || ||||| || || || || || |||||||| || ||||||||||||| | Sbjct 463741 TTTCAGAGTGAATGTTCTCCATCATGATTTGGAATCCGTAGAAGCATCTTGCTTCTGGGA 463800 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 | || ||||||| || |||| || ||||| |||||||| || ||||| || || | Sbjct 463801 TTTGAACTTCACCACTGAATCGCTCAACCAAGTTTTCATTGACAATTCCGTCGGATGCAG 463860 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGAGGTTAATGTATT 19433 | || ||||| | || || ||||| | | | ||||| |||| | || || Sbjct 463861 CGAAGAATGCGAGAACGTGGGAGATAAAGTAGCGCTCGTCATCATTGAGTCTGTTG--TT 463918 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| || | | ||| || || | ||| | ||||| | ||||| ||||| || ||||| Sbjct 463919 CCAGTCGTGTAGATCCTTTGACAGATCAATCTCTTCTGCGGTCCAGAAAGATGCTTCTGC 463978 Query 19494 TTTTTTATACATGTTCCATAT 19514 || || ||||| | ||| || Sbjct 463979 CTTCTTGTACATCTGCCAGAT 463999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| ||| || || || ||||| | || | ||| || || || || | Sbjct 463392 CATGCAAAGTCAGTGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGT 463451 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||| ||| || || | || || | |||||| || || || || ||||| || ||||| Sbjct 463452 CCAGCCATGAGACCACGCTTCTTAAGCCAGAAGATGGAGGCGAAGGATCCGGAGAAGAAA 463511 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 |||||||| || || || ||||| || || | || || || ||| || || | ||| Sbjct 463512 ATACCTTCAACGGCGGCGAAAGCGACGAGACGTTGAGCAAAAGTAGAATTCTTGTCTTGA 463571 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 |||||||| | ||||| || |||||||| || Sbjct 463572 ATCCATTTGACAGCCCAGTCGGCCTTCTTCTT 463603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102855699440