Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11 170 2e-36 seq1 109 4e-18 seq19 100 2e-15 seq52 86.0 5e-11 >seq11 Length=1281110 Score = 170 bits (188), Expect = 2e-36 Identities = 396/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || ||||| || || || ||| | | | | | || | | Sbjct 238156 TATTGGTATCGATTTGGGTACCACCTACTCCTGCGTGGGTATCTTCCGTGACGATAGAAT 238097 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| || ||||| ||| |||| || ||||| | ||| ||||||| || Sbjct 238096 CGAAATTATCGCCAACGACCAAGGAAACCGAACCACCCCATCCTTCGTTGCTTTCACAGA 238037 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | | |||||||| || || |||||| | | || || | ||| || Sbjct 238036 TACCGAGCGTCTGATCGGTGATGCTGCCAAGAATCAAGTCGCCATGAACCCAATCAACAC 237977 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || ||||| || ||||| ||||| | ||||| | ||| | ||||| || | Sbjct 237976 CGTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCA-GATCCTGAGGTTCAAGCCG 237918 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 |||||||||| | || ||| | | ||| | | | ||||| || ||||| | | Sbjct 237917 ATATGAAGCACTTCCCATTCAAGGTCGTTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 237858 Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | || ||||| |||||||| |||| || || ||| | || | Sbjct 237857 AGT--TCAAGGGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 237800 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || || |||| ||||| | || | | || || | || Sbjct 237799 CAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACTGTCAACAACGCCGTCGTCAC 237740 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| || || | || ||||||||||||||||| || || ||||| | ||||| Sbjct 237739 AGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 237680 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||| || || ||||| ||||| |||||||| || ||||| |||| || || | Sbjct 237679 TGGTCTTAACGTCCTCCGTATCATCAACGAACCTACCGCAGCTGCTATTGCTTACGGTTT 237620 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | | ||| || | ||| || |||||||| ||| ||| || Sbjct 237619 GGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 237569 >seq1 Length=3180511 Score = 109 bits (120), Expect = 4e-18 Identities = 118/155 (76%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | || || || ||||| ||||| || || || ||| || Sbjct 1326169 GTTGGGCAAGAAGGTCTCAAAGGCCGTTATCACTGTTCCAGCTTACTTCAACGACAACCA 1326110 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||||||| || |||||||| ||||| || ||||| || || ||||| ||||| Sbjct 1326109 ACGTCAAGCTACCAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATCATCAA 1326050 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 |||||||| |||||||| |||| || || |||| Sbjct 1326049 CGAACCTACCGCTGCTGCCATTGCTTACGGTCTTG 1326015 >seq19 Length=793105 Score = 100 bits (110), Expect = 2e-15 Identities = 117/157 (75%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049 ||| ||| ||||| ||||| ||||| ||||| ||| || ||||| |||||| || | Sbjct 598479 TAGTTATTGGTATCGATTTGGGAACTACATACTCTTGCGTCGGTGTGATGCAAAAGGGAA 598538 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 ||||||| ||| | | || |||||||| |||||| ||| ||||||||||| | |||| Sbjct 598539 AAGTTGAGATTTTGGTAAACGATCAAGGACACAGAATTACACCATCTTATGTCGCCTTCA 598598 Query 550110 CGGAAACTGAACA---TTTAGTTGGTGATGCAGCAAA 550143 | || |||| | |||||||| || ||||| || Sbjct 598599 CCGA---TGAAGAGAGATTAGTTGGAGACGCAGCCAA 598632 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||| ||||| || || || ||| ||| | || ||||| Sbjct 598940 GTTACCCATGCAGTTGTCACTGTTCCAGCTTACTTCAACGACAACCAAAGACAGGCTACC 598999 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || |||||||| || ||||| | ||||| || |||||| |||| ||||||||||| Sbjct 599000 AAGGATGCTGGTATCATCGCTGGTTTGAATGTCCTCCGTATTGTCAACGAACCTACTGCC 599059 Query 550511 GCTGCACTTGCATATGG 550527 || || |||| || || Sbjct 599060 GCAGCTATTGCCTACGG 599076 >seq52 Length=201257 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || |||||||| || || || || ||||||||||||||||| |||| Sbjct 160267 ATGCCGTCGTTACCGTTCCAGCATACTTCAACGATTCTCAACGTCAAGCTACTAAGGATG 160208 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | |||||||| | || || || | || | || || || ||||||||||| | Sbjct 160207 CTGGTCAAATTGCTGGTTTGAACGTCCTCAGAGTTGTGAACGAGCCAACTGCTGCTGCTC 160148 Query 550518 TTGCATATGG 550527 | || || || Sbjct 160147 TCGCTTACGG 160138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029251259704540