Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31]
846 sequences; 44,684,193 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq11 170 2e-36
seq1 109 4e-18
seq19 100 2e-15
seq52 86.0 5e-11
>seq11
Length=1281110
Score = 170 bits (188), Expect = 2e-36
Identities = 396/591 (67%), Gaps = 6/591 (1%)
Strand=Plus/Minus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || ||||| || || || ||| | | | | | || | |
Sbjct 238156 TATTGGTATCGATTTGGGTACCACCTACTCCTGCGTGGGTATCTTCCGTGACGATAGAAT 238097
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|||||||| ||||| || ||||| ||| |||| || ||||| | ||| ||||||| ||
Sbjct 238096 CGAAATTATCGCCAACGACCAAGGAAACCGAACCACCCCATCCTTCGTTGCTTTCACAGA 238037
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| || | | | | |||||||| || || |||||| | | || || | ||| ||
Sbjct 238036 TACCGAGCGTCTGATCGGTGATGCTGCCAAGAATCAAGTCGCCATGAACCCAATCAACAC 237977
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| || ||||| || ||||| ||||| | ||||| | ||| | ||||| || |
Sbjct 237976 CGTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCA-GATCCTGAGGTTCAAGCCG 237918
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291
|||||||||| | || ||| | | ||| | | | ||||| || ||||| | |
Sbjct 237917 ATATGAAGCACTTCCCATTCAAGGTCGTTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 237858
Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| | | |||| | || ||||| |||||||| |||| || || ||| | || |
Sbjct 237857 AGT--TCAAGGGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 237800
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || || |||| ||||| | || | | || || | ||
Sbjct 237799 CAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACTGTCAACAACGCCGTCGTCAC 237740
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
|| ||||| || || | || ||||||||||||||||| || || ||||| | |||||
Sbjct 237739 AGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 237680
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| ||||| || || ||||| ||||| |||||||| || ||||| |||| || || |
Sbjct 237679 TGGTCTTAACGTCCTCCGTATCATCAACGAACCTACCGCAGCTGCTATTGCTTACGGTTT 237620
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | | ||| || | ||| || |||||||| ||| ||| ||
Sbjct 237619 GGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 237569
>seq1
Length=3180511
Score = 109 bits (120), Expect = 4e-18
Identities = 118/155 (76%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | | | || || || ||||| ||||| || || || ||| ||
Sbjct 1326169 GTTGGGCAAGAAGGTCTCAAAGGCCGTTATCACTGTTCCAGCTTACTTCAACGACAACCA 1326110
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
|||||||||||| || |||||||| ||||| || ||||| || || ||||| |||||
Sbjct 1326109 ACGTCAAGCTACCAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATCATCAA 1326050
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|||||||| |||||||| |||| || || ||||
Sbjct 1326049 CGAACCTACCGCTGCTGCCATTGCTTACGGTCTTG 1326015
>seq19
Length=793105
Score = 100 bits (110), Expect = 2e-15
Identities = 117/157 (75%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049
||| ||| ||||| ||||| ||||| ||||| ||| || ||||| |||||| || |
Sbjct 598479 TAGTTATTGGTATCGATTTGGGAACTACATACTCTTGCGTCGGTGTGATGCAAAAGGGAA 598538
Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109
||||||| ||| | | || |||||||| |||||| ||| ||||||||||| | ||||
Sbjct 598539 AAGTTGAGATTTTGGTAAACGATCAAGGACACAGAATTACACCATCTTATGTCGCCTTCA 598598
Query 550110 CGGAAACTGAACA---TTTAGTTGGTGATGCAGCAAA 550143
| || |||| | |||||||| || ||||| ||
Sbjct 598599 CCGA---TGAAGAGAGATTAGTTGGAGACGCAGCCAA 598632
Score = 86.0 bits (94), Expect = 5e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||| ||||| || || || ||| ||| | || |||||
Sbjct 598940 GTTACCCATGCAGTTGTCACTGTTCCAGCTTACTTCAACGACAACCAAAGACAGGCTACC 598999
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|| |||||||| || ||||| | ||||| || |||||| |||| |||||||||||
Sbjct 599000 AAGGATGCTGGTATCATCGCTGGTTTGAATGTCCTCCGTATTGTCAACGAACCTACTGCC 599059
Query 550511 GCTGCACTTGCATATGG 550527
|| || |||| || ||
Sbjct 599060 GCAGCTATTGCCTACGG 599076
>seq52
Length=201257
Score = 86.0 bits (94), Expect = 5e-11
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || |||||||| || || || || ||||||||||||||||| ||||
Sbjct 160267 ATGCCGTCGTTACCGTTCCAGCATACTTCAACGATTCTCAACGTCAAGCTACTAAGGATG 160208
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | |||||||| | || || || | || | || || || ||||||||||| |
Sbjct 160207 CTGGTCAAATTGCTGGTTTGAACGTCCTCAGAGTTGTGAACGAGCCAACTGCTGCTGCTC 160148
Query 550518 TTGCATATGG 550527
| || || ||
Sbjct 160147 TCGCTTACGG 160138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029251259704540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |