Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11 123 2e-23 seq27 87.8 1e-12 >seq11 Length=1281110 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | ||||| || |||||||| ||||| || || || ||| | Sbjct 151729 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAGTCGGAAAGTGTTCTA 151670 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| || |||||| || | ||| | |||||| Sbjct 151669 CCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGTTGGTCAGGGGGGATACCCTCC 151610 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | | || ||||||| || || || | ||| Sbjct 151609 TTATCCTGAATCTTTGACTTGACATTATCAATAGTATCTGACGATTCAACTTCTAATGTA 151550 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || ||||| || ||||| Sbjct 151549 ATTGTCTTCCCAGTCAAAGTCTTAACAAAGATTTGCAT 151512 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||||| || || ||||| || |||||||| || || | || | || || Sbjct 151492 ACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCTTCA 151433 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || ||||| || || || || || ||||| || | || | ||||||||||| | Sbjct 151432 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGA 151373 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | | || |||| ||| ||||||| || || || ||| Sbjct 151372 ATCTTAGACTTTACATTATCGATGGTATCCGACGACTCAACCTCCAAAGTGATGGTCTTT 151313 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || || ||||||||||| Sbjct 151312 CCGGTTAAAGTCTTGACGAAAATCTGCAT 151284 >seq27 Length=671268 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || |||||||| || || ||| ||||||||| || ||||| || || ||| | || Sbjct 263810 AGACGTAACACCAAGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTACGG 263869 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| || || || |||| ||||||||| || | || | |||||| Sbjct 263870 CCATCCTCAAGTTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCC 263929 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 263930 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTG 263989 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | || || || || |||||||| Sbjct 263990 ATGGTTTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 264027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933672295258