Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31]
846 sequences; 44,684,193 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq11 141 6e-28
seq52 91.5 1e-12
seq1 89.7 3e-12
seq54 87.8 1e-11
>seq11
Length=1281110
Score = 141 bits (156), Expect = 6e-28
Identities = 363/548 (66%), Gaps = 6/548 (1%)
Strand=Plus/Minus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|||||||| ||||| || || || ||| || || | | | | | | | || | |
Sbjct 238155 ATTGGTATCGATTTGGGTACCACCTACTCCTGCGTGGGTATCTTCCGTGACGATAGAATC 238096
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| |||||||| || |||| || ||||| | ||| |||| || ||
Sbjct 238095 GAAATTATCGCCAACGACCAAGGAAACCGAACCACCCCATCCTTCGTTGCTTTCACAGAT 238036
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || | ||| || || |||||||| || |||||| || || || | || ||
Sbjct 238035 ACCGAGCGTCTGATCGGTGATGCTGCCAAGAATCAAGTCGCCATGAACCCAATCAACACC 237976
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || ||||| || | ||||||||||| || || | ||| | || ||| | |||
Sbjct 237975 GTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCAGATCCTGAGGTTCAAGCCGAT 237916
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | || || ||||| | | || || || ||| || || | |
Sbjct 237915 ATGAAGCACTTCCCATTCAAGGTCGTTGACCGTGCCGGAAAGCCAGTCATTGAGGTCGAG 237856
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || | || ||||| |||| ||| |||| ||||| ||| | || | ||
Sbjct 237855 TTCAAG--GGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGTCA 237798
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | | || || ||| | || ||||| | || | | || || | ||
Sbjct 237797 AGATGAGAGAGACTGCTGAGG-CTTACCTTGGTGGAACTGTCAACAACGCCGTCGTCACA 237739
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || | ||||| ||||||||||| || || || || || |||||
Sbjct 237738 GTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGCT 237679
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
|||||||| || | ||||| || || ||||| || ||||| || ||||||| ||| |
Sbjct 237678 GGTCTTAACGTCCTCCGTATCATCAACGAACCTACCGCAGCTGCTATTGCTTACGGTTTG 237619
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 237618 GACAAGAA 237611
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | ||| | ||| ||| || | || ||||| | || ||
Sbjct 151505 ACGAAGACGAAGGACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCCGAAAGGGT 151446
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | |||||||||||| || ||||| || |||||||||||||| || || || |||||
Sbjct 151445 GCGGCCATCTTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCGGGTGGGATTCC 151386
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||||||||||| || ||| || || ||||| | | | || | |||
Sbjct 151385 CTCCTTGTCTTGAATCTTAGACTTTACATTATCGATGGTATCCGACGACTCAACCTCCAA 151326
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| | |||||| |||||||| ||
Sbjct 151325 -AGTGATGGTCTTTCCGGTTAAAGTCTTGACGAAAATCTG 151287
Score = 98.7 bits (108), Expect = 6e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| |||||||||||||| || || || | |||||||||||| || |||||||| |||||
Sbjct 151211 ATCCTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCGGGGGGAATTCCCTCCTT 151152
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|||||||||||| || || || ||||| |||| | | || || || ||
Sbjct 151151 GTCTTGAATCTTCGACTTAACGTTATCGATAGTGTCAGAAGATTCAACCTCGAGCGTGAT 151092
Query 480737 AGTTTTACCGGTGAGAGTCTTAAC 480760
|| || |||||||| ||||||||
Sbjct 151091 GGTCTTTCCGGTGAGTGTCTTAAC 151068
Score = 93.3 bits (102), Expect = 3e-13
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || | || ||||| || || || || || | || ||
Sbjct 151733 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAGTCGGAAAGTGT 151674
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
||| ||| || | |||||||| ||||| || | | ||||| ||||| || || ||
Sbjct 151673 TCTACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGTTGGTCAGGGGGGATACC 151614
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||| || ||||||||| |||||| ||||||||||| | | | ||| |
Sbjct 151613 CTCCTTATCCTGAATCTTTGACTTGACATTATCAATAGTATCTGACGATTCAACTTCTAA 151554
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | ||||||||| || |||||
Sbjct 151553 TGTAATTGTCTTCCCAGTCAAAGTCTTAACAAAGATTTG 151515
>seq52
Length=201257
Score = 91.5 bits (100), Expect = 1e-12
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || |||| ||||||||||| || || ||||||||||||||||| ||||| ||||
Sbjct 160267 ATGCCGTCGTTACCGTTCCAGCATACTTCAACGATTCTCAACGTCAAGCTACTAAGGATG 160208
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || |||||| ||| | || || | | || | || || ||||| || || || |
Sbjct 160207 CTGGTCAAATTGCTGGTTTGAACGTCCTCAGAGTTGTGAACGAGCCAACTGCTGCTGCTC 160148
Query 474855 TTGCTTATGGTCTTGATAAGAAT 474877
| ||||| ||| | || ||| ||
Sbjct 160147 TCGCTTACGGTTTGGAGAAGGAT 160125
>seq1
Length=3180511
Score = 89.7 bits (98), Expect = 3e-12
Identities = 113/154 (73%), Gaps = 1/154 (1%)
Strand=Plus/Minus
Query 474717 TTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775
|||| ||||||| | | | || || || ||||||||||| || || || || |||
Sbjct 1326168 TTGGGCAAGAAGGTCTCAAAGGCCGTTATCACTGTTCCAGCTTACTTCAACGACAACCAA 1326109
Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835
|||||||| || || ||||| || ||||| |||||||| || | ||||| || ||
Sbjct 1326108 CGTCAAGCTACCAAGGATGCTGGTGCCATTGCCGGTCTTAACGTCCTCCGTATCATCAAC 1326049
Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869
||||| || || || || ||||||| |||||||
Sbjct 1326048 GAACCTACCGCTGCTGCCATTGCTTACGGTCTTG 1326015
>seq54
Length=188590
Score = 87.8 bits (96), Expect = 1e-11
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| ||||||||||||||||| || || | |||||||| || ||||||||||| ||||||
Sbjct 62476 TCCTCAAGTTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGAGGAATTCCCTCCTTG 62535
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| |||||| || || || |||| | |||||||| ||
Sbjct 62536 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATG 62595
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 62596 GTCTTGCCCGTAAGGGTCTTGACGAA 62621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268142910955208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |