Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11 223 3e-52 seq1 134 1e-25 seq5 107 1e-17 seq52 102 6e-16 >seq11 Length=1281110 Score = 223 bits (246), Expect = 3e-52 Identities = 934/1451 (64%), Gaps = 25/1451 (2%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | ||| |||||||| ||||||||||| || || | | |||||| Sbjct 236717 ATTCCGTTGGCATCAAGATCGAATGTGACCTCAATTTGAGGAACACCACGTGGTGCAGGT 236776 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 236777 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 236836 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | |||||| || ||| ||| || || || | || | || || | Sbjct 236837 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 236896 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| || | |||||||| |||||||| Sbjct 236897 GACTTCTTGGTGGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATCTGTCCACCAGCA 236956 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 236957 GTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 237016 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | |||| ||| ||||| || || | |||||||| ||||||||||| ||| Sbjct 237017 GAGGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 237076 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT- 281856 || || || | | | ||| | | ||||| ||||| | | | | || | ||| Sbjct 237077 TCGGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCGGTGATGAGCT-TCTG 237135 Query 281857 --TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTT 281913 ||| | || ||||||| || || ||||| | || || || || || ||| ||||| Sbjct 237136 GATACGT--GGGATACGAGTGGAACCACCAACGAGGACGATCTCGTGGACTCTG-GATTT 237192 Query 281914 ATCCAGTTTTGAATC--CAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAACAA 281970 || | || | ||| ||| | || | | || ||| | | || | || | Sbjct 237193 GTCAATCTTGGCATCGGCAAGGACACGGT--CGACTGGGGTGGTGGT-AGAACGGAAGAG 237249 Query 281971 GTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTC 282030 ||| |||||||| ||||| ||| | || | | | | |||| || || || Sbjct 237250 GTCCTGGCAAAGTTCCTCGAAACGAGCACGGGTGATGGAGGTGTAGAAATCGATACCCTC 237309 Query 282031 GAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 282090 ||| | ||| |||| ||||| | ||||||| || || || || | ||| |||||||| Sbjct 237310 GAAGAGAGAGTCAATCTCAATAGAGGTTTGAGCAGATGAGGAGAGGGTACGCTTAGCACG 237369 Query 282091 TTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT-TCAAATCTGTTTTAT 282149 || || || || | || | || | || || | | || |||||||| | || | Sbjct 237370 CTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAGC-GTTGGAGCTCAAATCTTTCTTGT 237428 Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209 |||| |||||| || || | | || ||||| || ||||| || ||||| | Sbjct 237429 GCTTTCGCTTGAATTCGCTTACGAAGTGGTTGACGAGACGGTTGTCAAAGTCCTCACCAC 237488 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | ||| | || | || | | || | ||| | || || || | | ||| | Sbjct 237489 CCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGA 237548 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329 ||| |||||| |||||| ||||| | ||| || || || || || || || Sbjct 237549 GAGAGACATCAAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTACGCTCACCCTCAA 237608 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 || || || | ||| || |||| |||||| || || ||||| || || || | | | Sbjct 237609 TCTTCTTGTCCAAACCGTAAGCAATAGCAGCTGCGGTAGGTTCGTTGATGATACGGAGGA 237668 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 | |||||||||||||| || || || || || ||||| | |||||||||| | || | Sbjct 237669 CGTTAAGACCAGCAATGAGACCAGCGTCCTTGGTAGCTTGACGTTGTGAATCGGTGAAGT 237728 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 | || || || || | ||||| | |||| || | |||| ||||| || || Sbjct 237729 AAGCTGGGACTGTGACGACGGCGT-TGTTGACAGTTCCACCAAGGTAAGCCTCAGCAGTC 237787 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTC- 282567 | | |||| || || ||||| || || |||| |||||| | |||||||| || Sbjct 237788 TCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAATTGCTTGTTCTCG 237847 Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627 |||| | || |||| ||| || || | || || || ||||| | Sbjct 237848 CCCTTGA-ACTCGACCTCAATGACTGGCTTTCCGGCACGGTCAACGACCTTGAATGGGAA 237906 Query 282628 ATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | |||||||| | |||||| || || || || | | |||||| || || || | Sbjct 237907 GTGCTTCATATCGGCTTGAAC-CTCAGGATCTGCGAACTTGCGACCAATCAAACGCTTCG 237965 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 |||| || | || ||| |||| || | || |||||| ||||| ||||| || |||| Sbjct 237966 CATCGAAGACGGTGTTGATTGGGTTCATGGCGACTTGATTCTTGGCAGCATCACCGATCA 238025 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 || | || || ||||| || | ||| | ||||| || || || || ||||| || || | Sbjct 238026 GACGCTCGGTATCTGTGAAAGCAACGAAGGATGGGGTGGTTCGGTTTCCTTGGTCGTTGG 238085 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 | |||||||| | | || | | | | | ||| || || | || || || |||| Sbjct 238086 CGATAATTTCGATTCTATCGTCACGGAAGATACCCACGCAGGAGTAGGTGGTACCCAAAT 238145 Query 282867 CAATACCAATA 282877 | ||||||||| Sbjct 238146 CGATACCAATA 238156 >seq1 Length=3180511 Score = 134 bits (148), Expect = 1e-25 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| || | ||||||||||||||||| |||||||| | ||||| ||| Sbjct 858570 GGTAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAACGTGTCGACTTTTCTGCTCGT 858511 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || ||||||||| |||||| ||| || |||| |||| ||||||||||||| | ||| Sbjct 858510 ACCGTTATTACTGGTGATCCCAATCTTTCTCTAGATGAGGTTGGTGTTCCTCGAAGCATT 858451 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCAA 432467 |||| || || || | | || | || ||| || || || ||| | ||| ||| Sbjct 858450 GCGAGAATCCTCACCTATCCGGAGACCGTTACACCACTCAACATCGATAAGTTGCATCAG 858391 Query 432468 TTAGTGAAAAATGGTAAAAGA-GTATATCCAGGTGCCAATTTTGTAAT 432514 | || |||||||| | ||| | |||| |||||||| | ||| || Sbjct 858390 CTCGTTAAAAATGG-ACCAGATGAGCATCCCGGTGCCAAATATGTCAT 858344 Score = 95.1 bits (104), Expect = 9e-14 Identities = 206/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||||| ||||||||| | || | || | ||||| | || ||| | | Sbjct 1325865 TATCGAAATCTTGACCTCCCAAATGGGTGTCACCGGCAGTAGCCTTGACGGTGAAGACAC 1325924 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || ||| | | |||| |||||| ||||||||||| | ||| | || || | Sbjct 1325925 CACCTTGGATGTTAAGGAGAGAAACATCGAAAGTTCCACCACCGAGATCGTAGATGAGAA 1325984 Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | || || ||| |||| ||| | ||||||| || |||| |||||||| || Sbjct 1325985 CGTTGCGCTCCTTG--TTGGACTTTCCAGCACCAAGACCGTAAGCAATGGCAGCAGCGGT 1326042 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||||| || || || | | || |||||||| ||||| || ||||| || || || Sbjct 1326043 AGGTTCGTTGATGATACGGAGGACGTTAAGACCGGCAATGGCACCAGCATCCTTGGTAGC 1326102 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 ||| | ||| ||||| || || || |||||||| |||||||| | || | |||||| Sbjct 1326103 TTGACGTTGGTTGTCGTTGAAGTAAGCTGGAACAGTGATAACGGCCTTTGAGACCTTCTT 1326162 Query 282486 TTCCAA 282491 |||| Sbjct 1326163 GCCCAA 1326168 >seq5 Length=1611257 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 131165 AAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTT 131224 || ||| || ||||||| || || ||||||||||||||||| ||| | || | ||||||| Sbjct 53471 AATATACAAGTTGTAGTTGCAACGATAGCATTTGGTATGGGCATTGACAAGCAGGATGTT 53412 Query 131225 AGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGT 131284 || |||| |||||||| | ||| |||| | | |||||||| ||||| |||| ||| Sbjct 53411 CGATTTGTCATTCATTATTGCCTTCCTAAGACTTTGGAAGGTTACTATCAGGAAACTGGA 53352 Query 131285 AGAGCAGGTCGTGATGG 131301 |||| || || ||||| Sbjct 53351 CGAGCGGGCCGAGATGG 53335 >seq52 Length=201257 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | ||| || || | ||||||||||||||| || || | || ||| | || || Sbjct 160129 TTCTCCAAACCGTAAGCGAGAGCAGCAGCAGTTGGCTCGTTCACAACTCTGAGGACGTTC 160188 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | |||||||||| || ||||| ||||| ||||| | ||| |||||||| || ||||| Sbjct 160189 AAACCAGCAATTTGACCAGCATCCTTAGTAGCTTGACGTTGAGAATCGTTGAAGTATGCT 160248 Query 282455 GGAACAGTAATAACGGCAT 282473 ||||| |||| ||||||| Sbjct 160249 GGAACGGTAACGACGGCAT 160267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740588864975196