Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 150 1e-31 seq23 91.5 1e-13 >seq1 Length=3180511 Score = 150 bits (166), Expect = 1e-31 Identities = 386/585 (66%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || || |||||| || ||||| || ||||| || | || ||| | Sbjct 2576085 ATTGGTGGTTTAGATACAGAGTTCAGTGCTATCTTCCGAAGAGCTTTCGCTTCTCGTATC 2576144 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| | | | | ||| || ||||||| | | ||||| || || | |||| | Sbjct 2576145 TTTCCCCCTGGCTTGATTGAAAAATTGGGCATTCAGCATGTGAAGGGTATTCTTCTTTTT 2576204 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CA 19419 || || |||||| |||||| || | ||||| | || || | || | || | || Sbjct 2576205 GGTCCTCCGGGTACTGGAAAGACGCTCATTGCCCGTCAAATTGGAAAGATGCTGAATTCA 2576264 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | || || | | || ||||||||| | | || ||||| || |||||||| Sbjct 2576265 AGAGAGCCG---AAGGTCATCAACGGTCCTGAAGTACTGAACAAATACGTTGGTCAATCC 2576321 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG- 19538 ||||||||| | ||| | ||||| ||||| ||| ||| | | || | |||| | Sbjct 2576322 GAAGAAAATATCCGAAAGCTCTTTGCCGACGCCGAA-AAGGAGTACAAGGAAAAGGGAGA 2576380 Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 | | ||| | || || || || | ||||||||||| || | ||||| || ||||| Sbjct 2576381 CGAGAGTGGCCTTCATATCATCATTTTCGATGAATTGGATGCTGTATGTAAACAGAGAGG 2576440 Query 19599 ---------TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 | ||||| || ||| || |||| ||||||||||||||| ||||||| Sbjct 2576441 AAGTGGTGCTGGTGGTGGAACTGGTGTTGGAGACAGTGTTGTCAATCAACTTTTGTCAAA 2576500 Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | | ||||||||| |||| || ||||| ||| | ||||||| ||||| || | |||| Sbjct 2576501 ACTTGACGGTGTTGACCAGCTCAATAACATTCTTCTTATTGGAATGACCAACCGTATGGA 2576560 Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769 | || || ||| ||| | ||||| || || ||||| | | || |||||| | | Sbjct 2576561 TATGATTGATGACGCTTTACTTCGACCTGGACGTTTGGAGGTTCATATGGAAATTTCCCT 2576620 Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATC 19814 ||||| ||| ||| | | ||||| | || || ||||| || Sbjct 2576621 GCCCGACGAAGCTGGCAGAGCACAAATTCTCAAGATTCATACTTC 2576665 >seq23 Length=743066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 201/296 (68%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| || ||| | || || || ||||| |||||||| ||||| || Sbjct 463999 ATCTGGCAGATGTACAAGAAGGCAGAAGCATCTTTCTGGACCGCAGAAGAGATTGATCTG 463940 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTGCATTAAAACCAC--AAGAAAAAC---ATTTTATA 43843 | || || || ||| | |||| || | | || | || | | | ||||| Sbjct 463939 TCAAAGGATCTA-CACGACTGGAA--CAACAGACTCAATGATGACGAGCGCTACTTTATC 463883 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || ||| | || || || ||||| |||||| || ||||||||||| |||||| Sbjct 463882 TCCCACGTTCTCGCATTCTTCGCTGCATCCGACGGAATTGTCAATGAAAACTTGGTTGAG 463823 Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || || ||||||||| | ||||||||| |||| || || || || ||||| Sbjct 463822 CGATTCAGTGGTGAAGTTCAAATCCCAGAAGCAAGATGCTTCTACGGATTCCAAATCATG 463763 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || || ||||| || |||| ||| ||||| || || || || ||||| || Sbjct 463762 ATGGAGAACATTCACTCTGAAACATACTCGCTTCTCATCGACACATATATCAAGGA 463707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451901980230