Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31]
846 sequences; 44,684,193 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq11 170 2e-37
seq27 167 3e-36
seq54 149 7e-31
seq29 114 1e-20
>seq11
Length=1281110
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| | ||||| ||||| || ||| | |||||||||||
Sbjct 151284 ATGCAGATTTTCGTCAAGACTTTAACCGGAAAGACCATCACTTTGGAGGTTGAGTCGTCG 151343
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| |||| ||||| |||||||||||||| || || |||||
Sbjct 151344 GATACCATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAA 151403
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || |||||||| ||||| || |||| || ||||| | || || ||
Sbjct 151404 CAACGTCTTATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTTTCGGATTACAAC 151463
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||||| ||| | ||| | ||| | |||||||| |||||
Sbjct 151464 ATCCAAAAGGAATCTACTTTACATTTGGTCCTTCGTCTTCGTGGTGG 151510
Score = 161 bits (178), Expect = 1e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || |||||||| ||||| | |||| |||| ||| | ||| ||
Sbjct 150797 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCGAGCGATACAATTGATAATGTTAAGTCT 150856
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||||||||||||||| || || ||||| |||||| | ||||| || || ||
Sbjct 150857 AAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAGCGTTTGATTTTCGCCGGAAAA 150916
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| ||||||| ||| ||| | ||||| || | |||||||| |||||||| |||
Sbjct 150917 CAACTTGAGGATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAGTCCACTCTCCAT 150976
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633
|| || | |||||||| ||||||
Sbjct 150977 CTCGTTCTCCGTCTTCGTGGTGGA 151000
Score = 134 bits (148), Expect = 2e-26
Identities = 160/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475
|||| ||||| || ||||| ||||| || || || |||||||| || ||| | || |
Sbjct 151066 TTGTTAAGACACTCACCGGAAAGACCATCACGCTCGAGGTTGAATCTTCTGACACTATCG 151125
Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535
|| | ||| | || ||||| ||||||||||||||||| || || || || ||| | |
Sbjct 151126 ATAACGTTAAGTCGAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTTGA 151185
Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595
| || || || |||||||| ||||||| ||| ||||| | || || ||| | || ||||
Sbjct 151186 TCTTCGCCGGAAAGCAACTTGAGGATGGTCGCACCCTCTCCGATTACAATATTCAGAAGG 151245
Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || | ||| | | |||||||||||
Sbjct 151246 AATCTACCCTCCACTTGGTCCTTAGACTTCGCGGTGG 151282
Score = 123 bits (136), Expect = 3e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| | || || ||||| ||||| | || ||||| ||
Sbjct 151512 ATGCAAATCTTTGTTAAGACTTTGACTGGGAAGACAATTACATTAGAAGTTGAATCGTCA 151571
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| | ||| | || |||||||| |||||||| || || || |||||
Sbjct 151572 GATACTATTGATAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCTGACCAA 151631
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || ||||| | ||||||| | | || || | ||||| ||
Sbjct 151632 CAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTAGAACACTTTCCGACTACAAC 151691
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| ||||||||| ||| | || | || | |||||||| ||||| |||
Sbjct 151692 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA 151742
>seq27
Length=671268
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| ||||| ||||| || || || || |||||||||||
Sbjct 264027 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 263968
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || ||||||||||||||||| || || |||||
Sbjct 263967 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACCAA 263908
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || ||||| |||||||| ||||||| ||||| || | ||||| ||
Sbjct 263907 CAGCGATTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACTCTTTCCGACTACAAC 263848
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| || ||||| ||||| | || || ||||| || |||||
Sbjct 263847 ATCCAAAAAGAGTCCACCCTTCACTTGGTGTTACGTCTCCGTGGTGG 263801
>seq54
Length=188590
Score = 149 bits (164), Expect = 7e-31
Identities = 142/182 (78%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| |||||||| || || |||||||| ||||| ||| | |||
Sbjct 62622 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACCAT 62563
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || ||||||||||||||||||||||| ||||| || || |
Sbjct 62562 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAACGCTT 62503
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| |||||||| ||||| | ||||| || ||||||| || |||||||
Sbjct 62502 GATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTCTCAGACTACAACATCCAAAA 62443
Query 27594 GG 27595
||
Sbjct 62442 GG 62441
>seq29
Length=608615
Score = 114 bits (126), Expect = 1e-20
Identities = 508/799 (64%), Gaps = 9/799 (1%)
Strand=Plus/Plus
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
|||| ||||| ||||||||||| || || ||| || || ||||| || |||||
Sbjct 545325 ACTCAACGATCTCCGTGCACAAGTTGGAGCTGCGAATAGTTCCTAGGTTCTTTTGGTTAC 545384
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
||| |||||| || || ||||| |||| | || | || |||||| || | ||
Sbjct 545385 TCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCTGTCTCGGTTTGCGCCT 545444
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127
||| || | || ||||| || | ||||| | |||||| ||||| | |
Sbjct 545445 CGAGAATAGAGTACCAAAGCTTTTGAGCCTTAATGGTCTTGCGACCCTTGCCAGCCTTCT 545504
Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187
| || | | || | || |||| | || | || || | | | || || |
Sbjct 545505 CGTAACTCTCATAGAGAGCCTCAAACTCCTCGCCATAAACGTCTGCCAAACCCGGACATT 545564
Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247
| || |||||||| ||| |||||| || || || ||| ||||||||| ||||
Sbjct 545565 CATTGGGGCACATAAGGGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCAG 545624
Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307
| ||||| | ||| ||| || || || ||| | || || | ||| || || ||
Sbjct 545625 GAATCCACAAGGCATAGAAGAGATCACGTGCGCGAACTTCTTCCTTACCATGATTCTTGC 545684
Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367
| | || || || || | | || |||||||||||||| || || || || | | |
Sbjct 545685 GTAGATCAAGGAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCAC 545744
Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424
| ||| | ||||| |||| || || | ||| || ||| || || || | ||
Sbjct 545745 CAGGGCGCTTGTTACCACCTTGGTCAACATATCTGGCGGTGTTGTTGAAAACTCGGAGCA 545804
Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484
| || | || || | || | ||||| ||||| ||||| | || | || || |
Sbjct 545805 TGGGAACAATGCCGTTGGAATTTCCGTTGGTACCGGCGATATAGGCACCAGTAGCACGGA 545864
Query 81485 CCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543
|| ||| || ||||| || ||||| | |||||| ||| ||||| |||
Sbjct 545865 TTCTG-TGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTC 545923
Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603
| || || ||||| || ||||| ||||||| ||||||||| | | ||| || ||
Sbjct 545924 AAAGTGTCGTAAATACCATCGATACTATCTTCTTTCATGTCGATGAGGAAGCACGAAGAA 545983
Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
| | | || | | | | || ||| ||| |||||||||| || || | || ||
Sbjct 545984 AGTT--GTGCCTGTGGGGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACT 546041
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721
||||||||| | | || || || || | | |||||| |||||||||||||| |
Sbjct 546042 TGTTTGACATTAAATTGTATGTCTCAATGGCACTCTCAATATCATCACCGTGAATACCAA 546101
Query 81722 TAGCTACACGCATAAACAT 81740
|| |||||||| | |||
Sbjct 546102 CCGCAACACGCATGATCAT 546120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570304368967520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |