Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 170 2e-37 seq27 167 3e-36 seq54 149 7e-31 seq29 114 1e-20 >seq11 Length=1281110 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | ||||| ||||| || ||| | ||||||||||| Sbjct 151284 ATGCAGATTTTCGTCAAGACTTTAACCGGAAAGACCATCACTTTGGAGGTTGAGTCGTCG 151343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| |||| ||||| |||||||||||||| || || ||||| Sbjct 151344 GATACCATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAA 151403 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || |||||||| ||||| || |||| || ||||| | || || || Sbjct 151404 CAACGTCTTATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTTTCGGATTACAAC 151463 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||| | ||| | ||| | |||||||| ||||| Sbjct 151464 ATCCAAAAGGAATCTACTTTACATTTGGTCCTTCGTCTTCGTGGTGG 151510 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| | |||| |||| ||| | ||| || Sbjct 150797 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCGAGCGATACAATTGATAATGTTAAGTCT 150856 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||||||||| || || ||||| |||||| | ||||| || || || Sbjct 150857 AAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAGCGTTTGATTTTCGCCGGAAAA 150916 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| ||| ||| | ||||| || | |||||||| |||||||| ||| Sbjct 150917 CAACTTGAGGATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAGTCCACTCTCCAT 150976 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | |||||||| |||||| Sbjct 150977 CTCGTTCTCCGTCTTCGTGGTGGA 151000 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||| ||||| || ||||| ||||| || || || |||||||| || ||| | || | Sbjct 151066 TTGTTAAGACACTCACCGGAAAGACCATCACGCTCGAGGTTGAATCTTCTGACACTATCG 151125 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | ||| | || ||||| ||||||||||||||||| || || || || ||| | | Sbjct 151126 ATAACGTTAAGTCGAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTTGA 151185 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || || || |||||||| ||||||| ||| ||||| | || || ||| | || |||| Sbjct 151186 TCTTCGCCGGAAAGCAACTTGAGGATGGTCGCACCCTCTCCGATTACAATATTCAGAAGG 151245 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || | ||| | | ||||||||||| Sbjct 151246 AATCTACCCTCCACTTGGTCCTTAGACTTCGCGGTGG 151282 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || ||||| ||||| | || ||||| || Sbjct 151512 ATGCAAATCTTTGTTAAGACTTTGACTGGGAAGACAATTACATTAGAAGTTGAATCGTCA 151571 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || |||||||| |||||||| || || || ||||| Sbjct 151572 GATACTATTGATAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCTGACCAA 151631 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| | ||||||| | | || || | ||||| || Sbjct 151632 CAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTAGAACACTTTCCGACTACAAC 151691 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | ||||||||| ||| | || | || | |||||||| ||||| ||| Sbjct 151692 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA 151742 >seq27 Length=671268 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| ||||| || || || || ||||||||||| Sbjct 264027 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 263968 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || ||||||||||||||||| || || ||||| Sbjct 263967 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACCAA 263908 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| |||||||| ||||||| ||||| || | ||||| || Sbjct 263907 CAGCGATTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACTCTTTCCGACTACAAC 263848 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || ||||| ||||| | || || ||||| || ||||| Sbjct 263847 ATCCAAAAAGAGTCCACCCTTCACTTGGTGTTACGTCTCCGTGGTGG 263801 >seq54 Length=188590 Score = 149 bits (164), Expect = 7e-31 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| |||||||| || || |||||||| ||||| ||| | ||| Sbjct 62622 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACCAT 62563 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || ||||||||||||||||||||||| ||||| || || | Sbjct 62562 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAACGCTT 62503 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||||| ||||| | ||||| || ||||||| || ||||||| Sbjct 62502 GATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTCTCAGACTACAACATCCAAAA 62443 Query 27594 GG 27595 || Sbjct 62442 GG 62441 >seq29 Length=608615 Score = 114 bits (126), Expect = 1e-20 Identities = 508/799 (64%), Gaps = 9/799 (1%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| ||||||||||| || || ||| || || ||||| || ||||| Sbjct 545325 ACTCAACGATCTCCGTGCACAAGTTGGAGCTGCGAATAGTTCCTAGGTTCTTTTGGTTAC 545384 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || || ||||| |||| | || | || |||||| || | || Sbjct 545385 TCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCTGTCTCGGTTTGCGCCT 545444 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127 ||| || | || ||||| || | ||||| | |||||| ||||| | | Sbjct 545445 CGAGAATAGAGTACCAAAGCTTTTGAGCCTTAATGGTCTTGCGACCCTTGCCAGCCTTCT 545504 Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 | || | | || | || |||| | || | || || | | | || || | Sbjct 545505 CGTAACTCTCATAGAGAGCCTCAAACTCCTCGCCATAAACGTCTGCCAAACCCGGACATT 545564 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 | || |||||||| ||| |||||| || || || ||| ||||||||| |||| Sbjct 545565 CATTGGGGCACATAAGGGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCAG 545624 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 | ||||| | ||| ||| || || || ||| | || || | ||| || || || Sbjct 545625 GAATCCACAAGGCATAGAAGAGATCACGTGCGCGAACTTCTTCCTTACCATGATTCTTGC 545684 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 | | || || || || | | || |||||||||||||| || || || || | | | Sbjct 545685 GTAGATCAAGGAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAAAGCAC 545744 Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | ||| | ||||| |||| || || | ||| || ||| || || || | || Sbjct 545745 CAGGGCGCTTGTTACCACCTTGGTCAACATATCTGGCGGTGTTGTTGAAAACTCGGAGCA 545804 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 | || | || || | || | ||||| ||||| ||||| | || | || || | Sbjct 545805 TGGGAACAATGCCGTTGGAATTTCCGTTGGTACCGGCGATATAGGCACCAGTAGCACGGA 545864 Query 81485 CCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 || ||| || ||||| || ||||| | |||||| ||| ||||| ||| Sbjct 545865 TTCTG-TGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTC 545923 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | || || ||||| || ||||| ||||||| ||||||||| | | ||| || || Sbjct 545924 AAAGTGTCGTAAATACCATCGATACTATCTTCTTTCATGTCGATGAGGAAGCACGAAGAA 545983 Query 81604 ATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 | | | || | | | | || ||| ||| |||||||||| || || | || || Sbjct 545984 AGTT--GTGCCTGTGGGGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACT 546041 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721 ||||||||| | | || || || || | | |||||| |||||||||||||| | Sbjct 546042 TGTTTGACATTAAATTGTATGTCTCAATGGCACTCTCAATATCATCACCGTGAATACCAA 546101 Query 81722 TAGCTACACGCATAAACAT 81740 || |||||||| | ||| Sbjct 546102 CCGCAACACGCATGATCAT 546120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304368967520