Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 120 2e-22 seq27 102 5e-17 seq54 84.2 1e-11 >seq11 Length=1281110 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| |||||||| ||||| ||||| ||| Sbjct 151510 CCACCACGAAGACGAAGGACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCCGAA 151451 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||||||||| || || || | ||| |||||||| || || Sbjct 151450 AGGGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCGGGTGGG 151391 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||||| |||| | || || || || ||| || Sbjct 151390 ATTCCCTCCTTGTCTTGAATCTTAGACTTTACATTAT-CGATGGTATCCGACGACTCAAC 151332 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || |||||||| || || || ||||||||||| Sbjct 151331 CTCCAAAGTGATGGTCTTTCCGGTTAAAGTCTTGACGAAAATCTGCAT 151284 Score = 109 bits (120), Expect = 3e-19 Identities = 154/209 (74%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || || | |||||| | || | |||||||||| ||||||||||||||| || || | Sbjct 150999 CCACCACGAAGACGGAGAACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCACTC 150940 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || ||| || | || ||||||||||| ||||| || || |||||||||||||| || | Sbjct 150939 AAGGTG--CGACCATCCTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGGG 150882 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTC 34655 | | |||||||||||| |||| || | ||||| || |||||| || ||| ||| Sbjct 150881 GGATTCCCTCCTTGTCCTGGATC-TTAGACTTAACATTATCAATTGTATCGCTCG-ACTC 150824 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTA 34684 || || | ||| || || || || |||| Sbjct 150823 GACCTCAAGGGTGATGGTCTTGCCAGTTA 150795 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || | ||||| |||||||||||||| || || ||| Sbjct 151738 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAGTCGGAA 151679 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | || || | || || || ||||| || || | ||||||||| || || Sbjct 151678 AGTGTTCTACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGTTGGTCAGGGGGG 151619 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCA 34657 | |||||||| || ||| |||| || || || ||| || ||| || | || | Sbjct 151618 ATACCCTCCTTATC-CTGAATCTTTGACTTGACATTATCAATAGTATCTGACGAT-TCAA 151561 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || || || || || || ||||| || ||||| Sbjct 151560 CTTCTAATGTAATTGTCTTCCCAGTCAAAGTCTTAACAAAGATTTGCAT 151512 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || ||||| ||||| || ||||| || || || || | || ||| Sbjct 151264 ACCAAGTGGAGGGTAGATTCCTTCTGAATATTGTAATCGGAGAGGGTGCGACCATCCTCA 151205 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || ||||| || || ||||| ||||| || || || | ||||||||||||| Sbjct 151204 AGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGA 151145 Query 34618 ATCTT 34622 ||||| Sbjct 151144 ATCTT 151140 >seq27 Length=671268 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| || || ||| ||| ||||| ||||| || || ||||| || || Sbjct 263810 AGACGTAACACCAAGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTACGG 263869 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || || || || || || ||||||||||| || || | ||||||| Sbjct 263870 CCATCCTCAAGTTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCC 263929 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 263930 TTGTCCTGGATCTT 263943 >seq54 Length=188590 Score = 84.2 bits (92), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| || ||||| || || || |||| |||||||| || || || || | Sbjct 62441 CCTTTTGGATGTTGTAGTCTGAGAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGA 62500 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | || || |||||||| || || | |||||||||||| |||||| Sbjct 62501 TCAAGCGTTGTTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATCTT 62546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726354941118