Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monilinia_20fructicola_20[genbank_20GCA_5F002162545.1_202017-05-31] 846 sequences; 44,684,193 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq27 113 3e-20 seq11 105 5e-18 >seq27 Length=671268 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 264027 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 263968 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 263967 GACACCATCGACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATCCCACCCGACCA 263909 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || || || || ||||| || || | || ||| | ||| ||||| Sbjct 263908 ACAGCGATTGATCTTCGCTGGAAAGCAACTTGAGGATGGCCGTACTCTTTCCGACTACAA 263849 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| |||||||||||||| | || || || ||| Sbjct 263848 CATCCAAAAAGAGTCCACCCTTCACTTGGTGTTA 263815 >seq11 Length=1281110 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || |||||| | || ||||| || || Sbjct 151284 ATGCAGATTTTCGTCAAGACTTTAACCGGAAAGACCATCACTTTGGAGGTTGAGTCGTCG 151343 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || ||| ||||| || || | || || || ||| Sbjct 151344 GATACCATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAA 151403 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 || ||| | || || || || |||||||| ||||| | |||| |||| | ||||||| Sbjct 151404 CAACGTCTTATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTTTCG--GATTACA 151461 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||| || || || |||||||| || Sbjct 151462 ACATCCAAAAGGAATCTACTTTACATTTGGT 151492 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || || || ||||| || || || || || | || || |||| ||| |||| | Sbjct 150797 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCGAGCGATACAATTGATAATGTTAAGTCT 150856 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || | | ||||| || || | || || || ||||||||||| || || ||||| || Sbjct 150857 AAGA-TCCAGGACAAGGAGGGAATCCCCCCCGACCAACAGCGTTTGATTTTCGCCGGAAA 150915 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| || || | ||||| || | || |||||||| ||||| |||||||| | || Sbjct 150916 ACAACTTGAGGATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAGTCCACTCTCCA 150975 Query 23814 TTTAGTT 23820 | | ||| Sbjct 150976 TCTCGTT 150982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006114909768