Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq31 324 1e-83 seq25 150 2e-31 seq64 105 7e-18 seq12 105 7e-18 >seq31 Length=267444 Score = 324 bits (358), Expect = 1e-83 Identities = 565/810 (70%), Gaps = 29/810 (4%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||||| |||||| | || ||| Sbjct 238150 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCGTTCTGGACCGCAGAGGAGATTGATCTG 238209 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||| ||| | ||| | || || ||||||| |||||| Sbjct 238210 TCCAAGGATCTGCACGATTGGAACAAGCGACTCAATGATGACGAGCGATTCTTCATCTCA 238269 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || |||||||| ||||||||||| || |||||||| Sbjct 238270 CACGTTCTCGCTTTCTTCGCAGCATCAGACGGCATTGTCAACGAGAACCTTGTCGAGCGC 238329 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| ||||| ||| | | ||||| || |||||||| || || |||||| || Sbjct 238330 TTCAGCTC-TGAGGTTCAGATCCCAGAGGCACGATGCTTCTATGGTTTCCAGATCATGAT 238388 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | ||||| |||| || || ||| || ||||| || | || || Sbjct 238389 GGAGAACATCCACTCCGAAACATACTCCCTCCTTATTGACACATATATCAGC------GA 238442 Query 116932 GGAGAAGCTCCG------TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985 | |||| || | |||| ||||||||||| | || |||||| || |||| Sbjct 238443 GCCAAAGCAGCGAACATATCTGTTCAACGCCATCGATAACATCCCGTGCATCCGTAAGAA 238502 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 ||| || |||||| |||| |||||| | | || | | || | |||| | || |||| Sbjct 238503 GGCTGACTGGGCGTTGCGATGGATCTCGGACAAAAATTCCACATTCGCCCTCCGATTGGT 238562 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105 || ||||| || || ||||| |||||||||| || ||||||||||| || ||||| Sbjct 238563 TGCTTTCGCCGCTGTTGAGGGTATCTTCTTTTCCGGTTCCTTCGCCGCCATCTTCTGGCT 238622 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 ||||| || || |||||| | ||||| || ||| |||||||| |||||| | || || Sbjct 238623 GAAGAAGCGTGGTCTCATGGCTGGCCTTACATTCTCGAACGAGCTTATCTCCCGTGATGA 238682 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225 |||| |||| ||||| |||||| | |||||| ||| ||| | | | | | || | Sbjct 238683 GGGTATGCACACAGACTTCGCCTGTCTCCTGTTCTCGCACTTGAAG-AACAAGCCAGATC 238741 Query 117226 -GGCGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 ||| | || ||| | ||| || || || || || || |||||| |||||||| Sbjct 238742 AGGCACTTGTGCAGAG-CATCATCGTTGAGGCAGTTGCTATTGAGCAGGAGTTCCTCACA 238800 Query 117284 GAAGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342 || || ||||| ||| || || || | || | ||||| ||||||||||| Sbjct 238801 GATGCTCTGCC-ATGCAAGCTTCTCGGCATGAACGCTGGTCTCATGTCACAATACATCGA 238859 Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGCC 117399 |||||| |||||| | ||||| | | | ||||| |||| | ||||||| | | Sbjct 238860 GTTCGTGGCCGACCGCCTGCTTTTGGCAC---TCGGCAACAAGAAGTTCTACAACGCCAC 238916 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||| | ||||| ||| | |||||| Sbjct 238917 CAACCCATTCGACTTCATGGAGAACATCTC 238946 >seq25 Length=313491 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || | | Sbjct 101690 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 101631 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || |||| ||||| ||||||||||| | ||||| Sbjct 101630 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCCGACCA 101572 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | |||||||||| ||||||||| Sbjct 101571 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCAGCGACTACAA 101512 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| ||||||| || || ||| | ||| Sbjct 101511 CATCCAGAAGGAATCCACGCTACACCTTGTGCTCCGC 101475 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || ||||| || || || |||| || ||| | | Sbjct 101462 ATGCAAATATTTGTGAAGACACTTACCGGCAAGACAATTACACTCGAGGTGGAATCTTCA 101403 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||||||||| | ||||| Sbjct 101402 GACACTATCGACAACGTT-AAGTCGAAGATTCAAGATAAGGAGGGCATCCCACCTGACCA 101344 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || || | || || || |||||||| Sbjct 101343 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGGACACTTTCAGACTACAA 101284 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || ||||| | ||||||||| || | || ||| Sbjct 101283 CATCCAGAAGGAGTCTACCCTGCACTTGGTGTTGCGCCTGCGTGGTGGC 101235 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGA 40772 || ||||| || |||||| |||| || || | | |||| | || || | | ||| Sbjct 101894 ACTGGCAAGACAATCACCCTCGAGGTGGAGTCTTCTGACACGATTGACAATG-TAAAGAG 101836 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| || || |||||||||| || | |||| ||| ||||| Sbjct 101835 CAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCAGGCAA 101776 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | |||||||||| |||||||||||| ||||||||| ||| || || Sbjct 101775 GCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAACATTCAGAAGGAGAGCACCCTCCA 101716 Query 40893 TCTAGT 40898 || || Sbjct 101715 CCTTGT 101710 >seq64 Length=168546 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 |||||||| || ||||| ||||| |||||||| |||| ||||| | | ||||| | | Sbjct 20616 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAAGTCGAGTCTAGCGACACCATC 20675 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| || |||||||||| || | Sbjct 20676 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAGCAGCGTTTG 20735 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | ||||| || ||||||||||| |||||| Sbjct 20736 ATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTGTCGGACTACAACATTCAGAAG 20795 Query 40879 G 40879 | Sbjct 20796 G 20796 >seq12 Length=397188 Score = 105 bits (116), Expect = 7e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 53309 GACAAGGAGGGGATCCCACCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 53250 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | ||||||||| ||||||||||||||||||||| ||| || ||||| || Sbjct 53249 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGAGCACCCTCCATCTCGT 53194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216037842160