Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq25 125 8e-24
seq64 111 2e-19
>seq25
Length=313491
Score = 125 bits (138), Expect = 8e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
||||||||||| |||| || |||||| || || ||||| || | || ||||| |
Sbjct 101248 CGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGTGTCCGGCCA 101307
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||||||||| ||||| ||||||||||| | || | || ||||||
Sbjct 101308 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTA 101367
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | ||| | || | | | ||| | | | ||||| |||||||| |||| || ||
Sbjct 101368 T-CTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCCACCTCGAGTGTAAT 101426
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || || ||||| ||||| ||||||||
Sbjct 101427 TGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462
Score = 100 bits (110), Expect = 3e-16
Identities = 141/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || || || || | || || |||||||| || |||||
Sbjct 101500 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 101559
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| || ||||||||||||| || | || |||||||||| ||| | || | |||| |||
Sbjct 101560 ATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CGT 101617
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| || || |||| |||||||| ||||| || | ||||| |
Sbjct 101618 TGTCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 101677
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 101678 CGAAGATCTGCAT 101690
>seq64
Length=168546
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 42988 TGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAG 43047
||| | |||| ||||| ||||| || | |||||| || | || || |||||||| || |
Sbjct 20802 TGCGCACCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGG 20743
Query 43048 CGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA 43107
|||| || | ||||||||||| | || | || ||||||||| ||| || ||||
Sbjct 20742 CGAAGATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA 20683
Query 43108 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | |||||||| || || || |||| ||||||||| ||||| || || ||||
Sbjct 20682 CATTGTCGATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCT 20623
Query 43168 TTACAAAGATTTGC 43181
|||| ||| | |||
Sbjct 20622 TTACGAAGCTGTGC 20609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814090469480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |