Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq25 113 4e-20
seq64 89.7 4e-13
>seq25
Length=313491
Score = 113 bits (124), Expect = 4e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||||||||||||||||||||||||||| | || |||| | || || || ||
Sbjct 101715 GTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTG 101774
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| ||||| ||||| ||||| ||||| | ||||||||||||| || ||
Sbjct 101775 CTTGCCTGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 101834
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | |||| | ||||||||| | ||| || |||||||| ||
Sbjct 101835 GCTCTTTACATTGTCAATCGTGTCAGAAGACTCCACCTCGAGGGTGATTGTCTTGCCAGT 101894
Query 45313 CA 45314
||
Sbjct 101895 CA 101896
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| |||||| |||||||| |||||||||||| | || ||| | || || || ||
Sbjct 101487 GTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTG 101546
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| |||| ||||| |||||||| || | |||||||||||| ||| ||
Sbjct 101547 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGAATCTT 101606
Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311
||| | || | || | ||||| ||| ||||| | ||| || |||||||| |
Sbjct 101607 CGACTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGG 101665
Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336
||| ||||| || ||||| |||||
Sbjct 101666 TCAAGGTCTTGACGAAGATCTGCAT 101690
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | || | || ||||||||||| || ||||||||| |||||||||||
Sbjct 101235 GCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGA 101294
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
||| || | || || || || || || ||||| || | ||||| ||||| || ||
Sbjct 101295 AAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 101354
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||| || ||| || |||||| | | |||| | |||||
Sbjct 101355 GATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCCAC 101414
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||| | ||||| |||||||| || || ||||||||||| |||||||||
Sbjct 101415 CTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463
>seq64
Length=168546
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 45141 TGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGG 45200
||| | ||||||||||||||||||| ||| ||| | || || || || |||||||
Sbjct 20802 TGCGCACCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGG 20743
Query 45201 CGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAA 45260
|||| ||||| ||||| ||||| || || | ||||||||||| || || ||| |
Sbjct 20742 CGAAGATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA 20683
Query 45261 CCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCT 45320
| | | | |||| | | ||| || || | || || |||||||| || || ||||
Sbjct 20682 CATTGTCGATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCT 20623
Query 45321 TCACAAAGATTTGC 45334
| || ||| | |||
Sbjct 20622 TTACGAAGCTGTGC 20609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395072835845311
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |