Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 174 2e-38 seq31 87.8 2e-12 >seq8 Length=557162 Score = 174 bits (192), Expect = 2e-38 Identities = 454/690 (66%), Gaps = 2/690 (0%) Strand=Plus/Plus Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 ||| | ||| || |||| || ||||||| | ||| |||| | || || || | Sbjct 460036 CAAGCCAGGGCACTCATTGGGGCACATCAGGGTCCAAGTGCCGTTCTGCTCGACGCGCTC 460095 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 ||| |||||||| || |||||||| || || ||||| | | | |||||| || Sbjct 460096 CATGAAGAGATCTGGGATCCAAAGGGCGTAGAAGAGATCGCGAGCACGGACTTCCTCCTT 460155 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || ||||| || || | |||| | | ||| | ||||| || || | ||| Sbjct 460156 GCCGTGGTTCTTACGGAGGTCCATGAACTGAAAGACATCGGCGTGCCATGGCTCAAGGTA 460215 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 ||||| | | || || || ||||| || ||||| || | ||| | ||| ||||| || Sbjct 460216 GATGGCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTT 460275 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 || ||||||||||| || | || |||||| ||| | || ||||| || ||||||| Sbjct 460276 GTACACTCTCAACATCGGTACAAGACCGTTGGATGTGCCGTTGGTGCCACCGATATAGGA 460335 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 ||| | ||||| ||||| || ||||| || || || || | || ||||| | Sbjct 460336 ACCAGTAGCACGGATATTGTGAACATGCAGACCAATACCGCCAGCGTTCTTGGAGATCAT 460395 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || ||| || | ||||| |||||||| || ||||| ||||| ||||| || | Sbjct 460396 AGCACATGTCTTGAGGGTGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGGCAATCAA 460455 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 || ||| || || ||| | | ||||| || | || | || || || || || Sbjct 460456 GAAGCAGGAAGCCAACTGGGCTTGCGGTGTTCCAGCGCTGAAAAGCGTTGGCGACGCATG 460515 Query 63695 CGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 || || | || || | |||| ||||| |||||||| || | || ||||| | Sbjct 460516 TGTGAAGTACTTCAGCGACATGTAG-TTGTATGTCTCAATCGCAGCCTCAATATCTTCTC 460574 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 || || || || || |||||||| | ||| ||||| ||||| ||| | | ||| || Sbjct 460575 CGTGGATACCGACCGCCACACGCATGATCATCTGCTGCGGTCTCTCAGCGACCTTGCCGT 460634 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 ||| | | | ||| ||| |||| ||| || || || || || | ||| |||| Sbjct 460635 CGATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGT 460694 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCT 63903 | || ||||| | ||| |||| ||||||| Sbjct 460695 CGCGGTCGTAGACAATGGCCGAGTTGAGCT 460724 >seq31 Length=267444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 293/451 (65%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || ||| |||||||| || || ||||| || ||||| || || || || || | Sbjct 239010 CATGACACCCGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 238951 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || ||| || || |||||||| || || || ||||| | ||||| | || || || Sbjct 238950 CAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 238891 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 | | | ||| || | || || ||||| || || ||| | ||| | || || Sbjct 238890 GAGTGCCAAAAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTT 238831 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || | || || ||| ||||| | || || || || || ||||| | || || Sbjct 238830 CATGCCGAGAAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGC 238771 Query 33518 ATTTGTTATAATAAATCTA-ACGGTTTCTTCA-CTCGGTGGATGTAATAAATGTTTAAAC 33575 | || || ||| || | | | | || | | | | | || || ||| Sbjct 238770 CTCAACGATGATGC-TCTGCACAAGTGCCTGATCTGGCTTGTTCTTC-AAGTGCGAGAAC 238713 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 | | ||| ||||| || ||||| |||||| || | || | ||||| || || Sbjct 238712 AGGAGACAGGCGAAGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAAT 238653 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || | ||| || |||||||| || ||||| || |||| ||||| || |||||| Sbjct 238652 GTAAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAA 238593 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 |||||||| || || || || || || |||| Sbjct 238592 AAGAAGATACCCTCAACAGCGGCGAAAGCAA 238562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813734494480