Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 176 6e-39 seq31 93.3 6e-14 >seq8 Length=557162 Score = 176 bits (194), Expect = 6e-39 Identities = 594/915 (65%), Gaps = 14/915 (2%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||||||||| | ||| || || ||||| || | || | || || ||||| Sbjct 459815 ATGATTTCAGTGCACAAGTTCGAACTTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTG 459874 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||| |||||||| || || ||||| || || ||||| || |||| | ||| | | Sbjct 459875 CGGTTGGCGGCATCCTTGTACAGGATGAAAGGTGTGCCAGTCTCGGTCTGGGCTTCAAGA 459934 Query 79786 ATCGCTTTCCAGA-CGACTCGA-GC---CTTTATTATAGACTTGTATCTCTTTTCTCTTT 79840 || || | ||||| | || | || | | | | ||| || || ||||| | Sbjct 459935 ATTGCATACCAGATCTTCTGGGCGCGAACGGTCTCAC-GACCCTTACCT----TCTCTCT 459989 Query 79841 CGTATTGTGTATATAA-TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 | ||| | || | || || |||||| || || | || || || ||||| || Sbjct 459990 CATATCGCTCGTAGAGCTCCTT-GAACTCATCACCGTAGACGTCAGACAAGCCAGGGCAC 460048 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || | || ||||||| | ||| || | | || || || | ||| |||||||| Sbjct 460049 TCATTGGGGCACATCAGGGTCCAAGTGCCGTTCTGCTCGACGCGCTCCATGAAGAGATCT 460108 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 || |||||||| || || ||||| | | | ||||| || || ||||| Sbjct 460109 GGGATCCAAAGGGCGTAGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTA 460168 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 || || | |||| | | ||| | ||||| || || | ||| ||||| | | Sbjct 460169 CGGAGGTCCATGAACTGAAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCA 460228 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || || ||||| || ||||| || | ||| | ||| ||||| || || ||||||||| Sbjct 460229 CCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACTCTCAAC 460288 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 || || | || ||| |||||||| || ||||| || ||||||| ||| | ||||| Sbjct 460289 ATCGGTACAAGACCGTTGGATGTGCCGTTGGTGCCACCGATATAGGAACCAGTAGCACGG 460348 Query 80200 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 80259 ||||| || ||||| || || || || | || ||||| | || ||| || Sbjct 460349 ATATTGTGAACATGCAGACCAATACCGCCAGCGTTCTTGGAGATCATAGCACATGTCTTG 460408 Query 80260 AACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGAC 80319 | || || |||||||| || ||||| ||||| ||||| || | || ||| || | Sbjct 460409 AGGGTGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGGCAATCAAGAAGCAGGAAGCC 460468 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 | ||| | ||||| || | || | || || || || || || || | || Sbjct 460469 AACTGGGCTTGCGGTGTTCCAGCGCTGAAAAGCGTTGGCGACGCATGTGTGAAGTACTTC 460528 Query 80380 TCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 |||| |||| ||||| |||||||| || | || ||||| | || || || || Sbjct 460529 AGCGACATGTAG-TTGTATGTCTCAATCGCAGCCTCAATATCTTCTCCGTGGATACCGAC 460587 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 ||| |||||||| | ||| ||||| ||||| ||| ||| |||| | ||| | | | Sbjct 460588 CGCCACACGCATGATCATCTGCTGCGGTCTCTCAGCGACCTTGCCGTCGATTCTGAGAAG 460647 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||| ||| |||| ||| || || || || || | ||| ||||| || ||||| | Sbjct 460648 GTATGATCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTAGAC 460707 Query 80559 AATAACCGAGTTGAG 80573 ||| |||||||||| Sbjct 460708 AATGGCCGAGTTGAG 460722 >seq31 Length=267444 Score = 93.3 bits (102), Expect = 6e-14 Identities = 295/452 (65%), Gaps = 4/452 (1%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| || ||| |||||||| || || ||||| || ||||| || || || || || | Sbjct 239010 CATGACACCCGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 238951 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || ||| || || |||||||| || || || ||||| | || || | || || || Sbjct 238950 CAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 238891 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 | | | ||| || | || || || || || || ||| | ||| | || || Sbjct 238890 GAGTGCCAAAAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTT 238831 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || | ||| || ||| ||||| | || || || || || ||||| | || || Sbjct 238830 CATGCCGAGAAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGC 238771 Query 49896 ATCTGTTATAATAGATCTA-ACGGTTTCTTCA-CTCGGTGGATGCAATAAATGTTTAAAC 49953 || || || | ||| || | | | | || | | | | | || || ||| Sbjct 238770 CTCAACGATGAT-GCTCTGCACAAGTGCCTGATCTGGCTTGTT-CTTCAAGTGCGAGAAC 238713 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 | | ||| ||||| || ||||| |||||| || | || || ||||| || || Sbjct 238712 AGGAGACAGGCGAAGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAAT 238653 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || || || | ||| || |||||||| || ||||| || |||| || || || || ||| Sbjct 238652 GTAAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAA 238593 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 |||||||| || || || ||||| || ||||| Sbjct 238592 AAGAAGATACCCTCAACAGCGGCGAAAGCAAC 238561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264391625240