Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25 87.8 2e-12 seq31 86.0 6e-12 >seq25 Length=313491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||||| | |||| || || || || || || Sbjct 101494 GTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 101553 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 101554 GCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 101613 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | |||||||||||||| || Sbjct 101614 ACGTTGTCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 101673 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 101674 TTGACGAAGATCTGCATA 101691 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | ||||| || || || | ||||| || || || |||||||| || Sbjct 101233 TGGCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCT 101292 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||| | || ||||| || |||||||| |||| ||||| ||||| || || Sbjct 101293 GAAAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGT 101352 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || || || ||| || || | | || | ||||| | | ||| Sbjct 101353 GGGATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCC 101412 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | ||||||||||| | ||| || || ||||||||||| Sbjct 101413 ACCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462 >seq31 Length=267444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 350/541 (65%), Gaps = 17/541 (3%) Strand=Plus/Plus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 ||||||| ||||||| || |||| | ||||| |||| || ||||| ||| ||||| Sbjct 238466 TCAACGCCATCGATAACATCCCGTGCATCCGTAAGAAGGCTGACTGGGCGTTGCGATGGA 238525 Query 50387 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50446 ||||||| || || ||| || || || || || ||| ||||| ||| Sbjct 238526 TCTCGGACAAAAATTCCACATTCGCCCTCCGATTGGTTGCTTTCGCCGCTGTTGAGGGTA 238585 Query 50447 TGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCC 50505 | || ||||||||| ||| || ||||| || | | || || | | | | | ||| | Sbjct 238586 TCTTCTTTTCCGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGTC-TCATGGCT 238644 Query 50506 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50565 ||||| || || |||||| | || || || || || || |||||||||||||| || Sbjct 238645 GGCCTTACATTCTCGAACGAGCTTATCTCCCGTGATGAGGGTATGCACACAGACTTCGCC 238704 Query 50566 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTA-TCATACGAAACAATTTTGGA--- 50621 ||| || | | | ||| | |||| || | || | | || || || | Sbjct 238705 TGT-----CTCCTGTTCTCGC--ACTTGAAGAACAAGCCAGATCAGGCACTTGTGCAGAG 238757 Query 50622 CATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGC 50681 ||| || || || || | || || | ||||| |||| || ||| | || || Sbjct 238758 CATCATCGTTGAGGCAGTTGCTATTGAGCAGGAGTTCCTCACAGATGCTCT-GCCATGCA 238816 Query 50682 A-TTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGAT 50740 | | | ||||||||||| | | |||| | ||||| ||||| || || ||| | Sbjct 238817 AGCTTCTCGGCATGAACGCTGGTCTCATGTCACAATACATCGAGTTCGTGGCCGACCGCC 238876 Query 50741 TGTTGTTGCAGCTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATG 50799 || | ||| || || |||| ||| | ||| || || ||||| || || ||| Sbjct 238877 TGCTTTTGGCACTCGG-CAACAAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 238935 Query 50800 AATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAA 50859 | ||||| || ||| ||||| || ||||| ||||| | ||||| ||||| ||| || Sbjct 238936 GAGAACATCTCACTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACCAA 238995 Query 50860 A 50860 | Sbjct 238996 A 238996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011288199120