Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq31 255 9e-63 >seq31 Length=267444 Score = 255 bits (282), Expect = 9e-63 Identities = 587/866 (68%), Gaps = 31/866 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| | |||||| Sbjct 238150 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCGTTCTGGACCGCAGAGGAGATTGATCTG 238209 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| ||| |||||||| | | || | | ||| |||||| || || || Sbjct 238210 TCCAAGGATCTGCACGATTGGAACAAGCGACTCAATGATGACGAGCGATTCTTCATCTCA 238269 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | || ||||| || | || || || || |||||||| || || || || || Sbjct 238270 CACGTTCTCGCTTTCTTCGCAGCATCAGACGGCATTGTCAACGAGAACCTTGTCGAG-CG 238328 Query 125198 ATTCT-CTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| ||| | || ||||||| ||||| || || ||||| ||||||| Sbjct 238329 CTTCAGCTCTGAGGTTCAG-ATCCCAGAGGCACGATGCTTCTATGGTTTCCAGATCATGA 238387 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314 | |||||| | ||||| |||| ||||| || ||||||| || || |||| || Sbjct 238388 TGGAGAACATCCACTCCGAAACATACTCCCTCCTTATTGACACATATATCAGCGAGCCAA 238447 Query 125315 -GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| || |||| || || || ||||| ||||| | | |||| || ||||| |||| Sbjct 238448 AGCAGCG--AACATAT-CTGTTCAACGCCATCGATAACATCCCGTGCATCCGTAAGAAGG 238504 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || | |||| | | || |||||| ||| | || || | | |||| | || |||| | Sbjct 238505 CTGACTGGGCGTTGCGATGGATCTCGGACAAAAATTCCACATTCGCCCTCCGATTGGTTG 238564 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | |||||||| || ||||| ||||||||||| ||| || || |||||||| ||||| | Sbjct 238565 CTTTCGCCGCTGTTGAGGGTATCTTCTTTTCCGGTTCCTTCGCCGCCATCTTCTGGCTGA 238624 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || |||||| | || || || | |||||| |||| || || || |||| Sbjct 238625 AGAAGCGTGGTCTCATGGCTGGCCTTACATTCTCGAACGAGCTTATCTCCCGTGATGAGG 238684 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAGA 125612 | | ||| ||||| ||| ||| ||||| |||| ||| || | || |||| Sbjct 238685 GTATGCACACAGACTTCGCCTGTCTCCTGTTCTCGC-ACT---TGAAGAACAAG-CCAGA 238739 Query 125613 TCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 || || || || ||||| | || || || || || || || ||||| Sbjct 238740 TCAGGCACTTGTGCAGAGCATCATCGTT------GAGGCAGTTGCTATTGAGCAGGAGTT 238793 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCGAGT 125730 || || || | || || || | | ||||||||| || | || |||| | | Sbjct 238794 CCTCACAGATGCTCTGCCATGCAAGCTTCTCGGCATGAAC-GCTGGTCTCATGTCACAAT 238852 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---TTTACA 125787 |||| ||||| ||||| || || || || | | | ||| ||||| | |||| Sbjct 238853 ACATCGAGTTCGTGGCCGACCGCCTGCTTT---TGGCACTCGGCAACAAGAAGTTCTACA 238909 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 |||||| || || || || |||||| | ||| ||||| | || ||||||||||| | Sbjct 238910 ACGCCACCAACCCATTCGACTTCATGGAGAACATCTCACTGGGCGGCAAGACCAACTTCT 238969 Query 125848 TCGAGAAGAAGGTCAGCGAGTACAAA 125873 |||||||| || |||||||| || Sbjct 238970 TCGAGAAGCGTGTTGGCGAGTACCAA 238995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054651749160