Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8 179 5e-40 seq31 96.9 4e-15 >seq8 Length=557162 Score = 179 bits (198), Expect = 5e-40 Identities = 454/688 (66%), Gaps = 2/688 (0%) Strand=Plus/Plus Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 ||| ||||| || |||| || ||||||| | ||| |||| | || || || | Sbjct 460036 CAAGCCAGGGCACTCATTGGGGCACATCAGGGTCCAAGTGCCGTTCTGCTCGACGCGCTC 460095 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 ||| |||||||| || |||||||| || || ||||| | | | |||||| || Sbjct 460096 CATGAAGAGATCTGGGATCCAAAGGGCGTAGAAGAGATCGCGAGCACGGACTTCCTCCTT 460155 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || ||||| || || | |||| | | ||| | ||||| || || | ||| Sbjct 460156 GCCGTGGTTCTTACGGAGGTCCATGAACTGAAAGACATCGGCGTGCCATGGCTCAAGGTA 460215 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 ||||| | | || || || ||||| || ||||| || | ||| | ||| ||||| || Sbjct 460216 GATGGCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTT 460275 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 || ||||||||||| || | || |||||| ||| | || ||||| || ||||||| Sbjct 460276 GTACACTCTCAACATCGGTACAAGACCGTTGGATGTGCCGTTGGTGCCACCGATATAGGA 460335 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 ||| | ||||| ||||| || ||||| || || || || | || ||||| | Sbjct 460336 ACCAGTAGCACGGATATTGTGAACATGCAGACCAATACCGCCAGCGTTCTTGGAGATCAT 460395 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || ||| || | ||||| ||||| || || ||||| ||||| ||||| || | Sbjct 460396 AGCACATGTCTTGAGGGTGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGGCAATCAA 460455 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || ||| || || ||| | ||||| || | || | || || || || || Sbjct 460456 GAAGCAGGAAGCCAACTGGGCTTGCGGTGTTCCAGCGCTGAAAAGCGTTGGCGACGCATG 460515 Query 63644 CGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 || || | || || | |||| ||||| |||||||| || | || ||||| | Sbjct 460516 TGTGAAGTACTTCAGCGACATGTAG-TTGTATGTCTCAATCGCAGCCTCAATATCTTCTC 460574 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 || || || || || |||||||| | ||| ||||| ||||| ||| ||| |||| || Sbjct 460575 CGTGGATACCGACCGCCACACGCATGATCATCTGCTGCGGTCTCTCAGCGACCTTGCCGT 460634 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 ||| | | | ||| ||| |||| ||| || || || || || | ||| |||| Sbjct 460635 CGATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGT 460694 Query 63823 CTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || ||||| | ||| |||||||||| Sbjct 460695 CGCGGTCGTAGACAATGGCCGAGTTGAG 460722 >seq31 Length=267444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 295/451 (65%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| || ||| |||||||| || || ||||| || ||||| || || || || || | Sbjct 239010 CATGACACCCGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 238951 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 || ||| || || |||||||| || || || ||||| | || || | || || || Sbjct 238950 CAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 238891 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | | | ||| || | || || ||||| || || ||| | ||| | || || Sbjct 238890 GAGTGCCAAAAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTT 238831 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | ||| || ||| ||||| | || || || || || ||||| | || || Sbjct 238830 CATGCCGAGAAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGC 238771 Query 33240 ATCTGTTATAATAGATCTA-ACGGTTTCTTCA-CTCGGTGGATGCAATAAATGTTTAAAC 33297 || || || | ||| || | | | | || | | | | | || || ||| Sbjct 238770 CTCAACGATGAT-GCTCTGCACAAGTGCCTGATCTGGCTTGTT-CTTCAAGTGCGAGAAC 238713 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | | ||| ||||| || ||||| |||||| || | || || ||||| || || Sbjct 238712 AGGAGACAGGCGAAGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAAT 238653 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || | ||| || |||||||| || ||||| || |||| ||||| || || ||| Sbjct 238652 GTAAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAA 238593 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||||||| || || || || || || |||| Sbjct 238592 AAGAAGATACCCTCAACAGCGGCGAAAGCAA 238562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943376661560