Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq31 149 1e-30 seq61 93.3 9e-14 >seq31 Length=267444 Score = 149 bits (164), Expect = 1e-30 Identities = 275/402 (68%), Gaps = 6/402 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| ||||||||||||||| ||||| ||| Sbjct 238973 TCGAAGAAGTTGGTCTTGCCGCCCAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGTG 238914 Query 251623 GCATTGT---ACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 || |||| ||| |||| | ||| ||||| | | | |||||| ||||| ||||| Sbjct 238913 GCGTTGTAGAACTTCTTG---TTGCCGAGTGCCAAAAGCAGGCGGTCGGCCACGAACTCG 238857 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAG 251739 | || ||| ||| || ||| ||||||||| | | || || | || || | Sbjct 238856 ATGTATTGTGACATGAGACCAGCGTTCATGCCGAGAAGCTTGCATGGCAGAGCATCTGTG 238797 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| |||| || | ||||||||||| | | || || ||| ||||| || Sbjct 238796 AGGAACTCCTGCTCAATAGCAACTGCCTCAACGATGATGCTCTGCACAAGTGCCTGATCT 238737 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 ||||||||| || | ||| ||||||| | | || | | ||||| |||||| || Sbjct 238736 GGCTTGTTCTTCAAGTGCGAGAACAGGAGACAGGCGAAGTCTGTGTGCATACCCTCATCA 238677 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||| | |||||| || | ||||||| ||| | ||||| ||| | |||||| Sbjct 238676 CGGGAGATAAGCTCGTTCGAGAATGTAAGGCCAGCCATGAGACCACGCTTCTTCAGCCAG 238617 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||||| ||| ||||| || || || | | |||||| ||| Sbjct 238616 AAGATGGCGGCGAAGGAACCGGAAAAGAAGATACCCTCAACA 238575 >seq61 Length=173479 Score = 93.3 bits (102), Expect = 9e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||||||||| | || ||| | || || |||| ||||| |||| ||| Sbjct 51354 GGCGAGGATCTGTGCAATTGCACATTCAACTTGGCGTACGGTGCAAAGATCTTGCTCAAC 51295 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | | ||||||||| | || || ||||| |||||||||| ||| | Sbjct 51294 CAGACACATCTCCGCCTTAAGCGTGGCCAGCGTTACGGTCTGCTCGGTCCCAACGGATCT 51235 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||| ||||| |||| ||| | ||||| || || || | Sbjct 51234 GGCAAGACCACACTTATGCGTGCCATCAACAACGAGCAGGTCGAAGGCTTCCCCAAGCAA 51175 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| ||||| || ||||||||| | ||||| Sbjct 51174 GACGAGGTCAAGACCGTGTACGTCGAGCACGACTTGGACTC 51134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830333942931