Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 172 1e-37 seq64 134 3e-26 seq31 134 3e-26 seq61 86.0 1e-11 seq55 86.0 1e-11 >seq25 Length=313491 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || || |||||||| |||||||| || || ||||| || |||||||| | Sbjct 101228 TTTACTGGCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGT 101287 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || ||||||| ||||| || | |||||| || ||||| ||||| | || |||| Sbjct 101288 AGTCTGAAAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGT 101347 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | ||||| ||||| ||||| ||||||||||| | ||| ||| ||||| ||||||| | Sbjct 101348 CAGGTGGGATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAG 101407 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || | || || || || || || || ||||| || ||||| ||||| Sbjct 101408 ATTCCACCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | |||||||||||| || || |||||||| || ||| | Sbjct 101464 CCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTG 101523 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||||||||| Sbjct 101524 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 101583 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 101584 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGACGACTCAACC 101643 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | |||||||||||| |||||||| Sbjct 101644 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690 >seq64 Length=168546 Score = 134 bits (148), Expect = 3e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || || || || | |||||||| | |||||| |||||||| || Sbjct 20794 TTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATC 20735 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| ||||||||||| ||||||||||| ||||| |||||| ||| Sbjct 20734 AAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCG 20675 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| ||| || || ||||| | |||||||| || || ||||||||||| ||||| Sbjct 20674 ATGGTGTC-GCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 20616 Query 68453 TATCTGCATTATG 68465 | ||| |||| Sbjct 20615 GCTGTGCGATATG 20603 >seq31 Length=267444 Score = 134 bits (148), Expect = 3e-26 Identities = 558/865 (65%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| |||||||| |||||||| || || |||||||||||||| |||||| | Sbjct 239010 CATGACACCCGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 238951 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC---GCCAAACTGCTTGGGGTA 10051 || || ||| |||||||||||| || ||||| ||| | |||| ||| || Sbjct 238950 CAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTT---GTT 238894 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 |||||||| | | |||||| ||||||||||||||||| || ||| || | | Sbjct 238893 GCCGAGTGCCAAAAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGC 238834 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 ||||||||| | | ||| || | || || | ||| |||| || | || || Sbjct 238833 GTTCATGCCGAGAAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAAC 238774 Query 10172 CGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || || ||| |||||||| || | | | ||||||||| | | ||| | Sbjct 238773 TGCCTCAACGATGATGCTCTGCACAAGTGCCTGATCTGGCTTGTTCTTCAAGTGCGAGAA 238714 Query 10232 CAGGAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 |||||| | || | ||| ||| | ||||| || ||| ||| | |||||| || | Sbjct 238713 CAGGAGACAGGCGAAGT-CTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGA 238655 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | || || | |||||| || || || ||||||||| |||||| ||| || |||| Sbjct 238654 ATGTAAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGG 238595 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGT 10407 | || | | |||||| || | | || || | || ||||| ||| | Sbjct 238594 AAAAGAAGATACCCTCAACAGCGGCGAAAGCAACCAATCGGAGGGCGAATGTGGAATTTT 238535 Query 10408 CGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 | ||| | || | | ||||| | |||||||| | | | ||||| | |||| Sbjct 238534 TGTCCGAGATCCATCGCAACGCCCAGTCAGCCTTCTTACGGATGCACGGGATGTTATCGA 238475 Query 10468 TAGCCTCGAAGAGCT-TGTT--ACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGAGC 10523 | || | ||| || | |||| ||| | |||| || | ||| | | |||| || Sbjct 238474 TGGCGTTGAACAGATATGTTCGCTGCTTTGGCTCG--CTGATATATGTG--TCAATAAGG 238419 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACG 10582 ||||||||| ||| ||||| | |||| | |||| || | ||||| ||| || Sbjct 238418 AGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAT-CG 238360 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 |||| ||| | || || | ||| | | |||||||| | || ||||| Sbjct 238359 TGCCTCTGGGATCTGAACCTCAGAGCTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCC 238300 Query 10643 ATC-GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA 10701 || | || |||| ||||| |||| | ||| ||||||| ||||| ||||| || | Sbjct 238299 GTCTGATG-CTGCGAAGAAAGCGAGAACGTGTGAGATGAAGAATCGCTCGTCATCATTGA 238241 Query 10702 GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAG 10761 || | ||| || || ||||| | || | | |||||| |||||||||| | Sbjct 238240 GTCGCTTGTTCCAATCGTGCAGATCCTTGGACAGATCAATCTCCTCTGCGGTCCAGAACG 238181 Query 10762 TGGCAACGGCCTTCTTGTACATCTG 10786 || ||||||||||||||||||| Sbjct 238180 ATGCCTCGGCCTTCTTGTACATCTG 238156 >seq61 Length=173479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 225772 GTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCA 225830 ||| | |||||| || |||||||| ||| || || | || | ||||||||| || | Sbjct 51136 GTCCAAGTCGTGCTCGACGTACACGGTCTTGACCTCGTCTTGCTT-GGGGAAGCCTTCGA 51194 Query 225831 GCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGA 225890 ||| | || || ||||| | || || ||||||| | ||||||||||||| | Sbjct 51195 CCTGCTCGTTGTTGATGGCACGCATAAGTGTGGTCTTGCCAGATCCGTTGGGACCGAGCA 51254 Query 225891 GGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCAC 225950 | |||||| | | || ||||| | | ||| | || ||| || | |||||| ||| Sbjct 51255 GACCGTAACGCTGGCCACGCTTAAGGCGGAGATGTGTCTGGTTGAGCAAGATCTTTGCAC 51314 Query 225951 CATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 | || || | | ||| ||||| |||||| ||||| |||||||| Sbjct 51315 CGTACGCCAAGTTGAATGTGCAATTGCACAGATCCTCGCCCTCCTC 51360 >seq55 Length=193993 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 195991 TTGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGA 196050 ||||||||||||||| || ||||||||||| |||| | |||||||| |||||||| Sbjct 64303 TTGGGTCGTCTTTGATGAGGTCCACTACATGCGCGACAAATCGCGTGGTGTGGTGTGGGA 64244 Query 196051 AGAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCC 196110 || | |||| ||| |||| || | |||| | |||||| | ||||| || | || Sbjct 64243 GGAGACGATTATTCTCCTCCCCGACAAGGTCCGATATGTCTTCCTCTCCGCCACGATCCC 64184 Query 196111 CAACGCCCGTGACTTTGCCTTGTGGTTCTCGAAGA 196145 ||||||| | || ||| |||| || | |||| Sbjct 64183 CAACGCCATGCAATTCGCCGAGTGGATCACCAAGA 64149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616743542520