Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25 136 9e-27 seq64 104 6e-17 seq31 87.8 4e-12 >seq25 Length=313491 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || || || | |||| ||| || ||||| || |||| Sbjct 101460 CATG-CCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGT 101518 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||| ||||| || || || | || || || ||||||||||| ||||| || Sbjct 101519 CGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGG 101578 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || || || ||||| || |||| || ||||| || || | || ||| | Sbjct 101579 GTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGACGACT 101638 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 101639 CAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690 >seq64 Length=168546 Score = 104 bits (114), Expect = 6e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||| | || ||||| || ||||| | || ||||| ||||||||| Sbjct 20794 TTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATC 20735 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 | |||||| || ||| || || || || || ||||| || ||| || || || || Sbjct 20734 AAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTC 20676 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||||| || || |||||||||||||| ||||| || || || ||||| ||||| Sbjct 20675 GATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 20616 Query 288465 TATCTGCATTATGT 288478 | ||| ||||| Sbjct 20615 GCTGTGCGATATGT 20602 >seq31 Length=267444 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| || | ||||||| ||||| ||||| |||||||| || || | | Sbjct 238823 TCGGCATGAACGCTGGTCTCATGTCACAATACATCGAGTTCGTGGCCGACCGCCTGCTTT 238882 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 ||||||||| | |||| | ||||| | | || || |||| ||| ||||| | Sbjct 238883 TGGCACTCGGCAACAAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATGGAGAACA 238942 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 | || || | || ||||| ||||||||||| |||||||| |||| || ||| Sbjct 238943 TCTCACTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACCAA 238995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646978867898