Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq31 145 2e-29 >seq31 Length=267444 Score = 145 bits (160), Expect = 2e-29 Identities = 564/875 (64%), Gaps = 25/875 (3%) Strand=Plus/Plus Query 242896 ATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTG 242955 || ||| | ||||| |||||||| | |||| | || |||||| | ||||| || |||| Sbjct 238150 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCGTTCTGGACCGCAGAGGAGATTGATCTG 238209 Query 242956 AACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 243015 | || | ||| ||| | || ||||||||| ||||| || |||||| | Sbjct 238210 TCCAAGGATCTGCACGATTGGAACAAGCGACTCAATGATGACGAGCGATTCTTCATCTCA 238269 Query 243016 CACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA 243074 ||| |||| | ||| ||||||| || || || ||||| | || || || | || | Sbjct 238270 CACGTTCTCGCTTTCTTCGCAGCATCAGACGGCATTGTCAACGAGAACCTTGTCGAGCG- 238328 Query 243075 CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAA 243134 ||| || || || | | ||||||||||| || |||| || ||| | | | Sbjct 238329 CTTCAGCTCTGAGGTTCAGATCCCAGAGGCACGATGCTTCTATGGTTTCCAGATCATGAT 238388 Query 243135 CGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGATGAAC- 243193 || ||||| || ||| ||| | || ||||| ||| | ||| |||| || | Sbjct 238389 GGAGAACATCCACTCCGAAACATACTCCCTCCTTATTGACACA--TATATCAGC-GAGCC 238445 Query 243194 -AAG-AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGC 243251 ||| |||||| | || ||| |||||||||| ||||| ||| | | ||| ||||| Sbjct 238446 AAAGCAGCGAACATATCTGTTCAACGCCATCGATAACATCCCGTGCATCCGTAAGAAGGC 238505 Query 243252 AAAATGGGCTCAGAAGTGGCTA--GAACCCGGT---AAAT----CATTTGCTGAGCGTCT 243302 | ||||| || || | || | ||| |||| |||| || || | Sbjct 238506 TGACTGGGC------GTTGCGATGGATCTCGGACAAAAATTCCACATTCGCCCTCCGATT 238559 Query 243303 CGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTG 243362 || || | | ||||| ||||| | |||||||| ||| ||||||||| || Sbjct 238560 GGTTGCTTTCGCCGCTGTTGAGGGTATCTTCTTTTCCGGTTCCTTCGCCGCCATCTTCTG 238619 Query 243363 GCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGA 243422 |||| ||| ||| | ||| ||||||| | || |||||| | ||| || || Sbjct 238620 GCTGAAGAAGCGTGGTCTCATGGCTGGCCTTACATTCTCGAACGAGCTTATCTCCCGTGA 238679 Query 243423 CGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACC 243482 ||||| | ||| | | |||| || ||| || | | ||||||||| | Sbjct 238680 TGAGGGTATGCACACAGACTTCGCCTGTCTCCTGTTCTCGCACTTGAAGAACAAGCCAG- 238738 Query 243483 ATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTT 243541 || | || || | |||||| || ||||||| | || |||| ||| | Sbjct 238739 ATCAGGCACTTGTGCAGAGCATCATCGTTGAGGCAGTTGCTATTGAGCAGGAGTTCCTCA 238798 Query 243542 GCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCG 243601 || ||| | |||||| |||| | ||||||||| ||| |||||| ||| ||||||| Sbjct 238799 CAGATGCTCTGCCATGCAAGCTTCTCGGCATGAACGCTGGTCTCATGTCACAATACATCG 238858 Query 243602 AATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGA 243661 | ||||| ||||||||| | | | || || || | |||| | |||||| ||| | Sbjct 238859 AGTTCGTGGCCGACCGCCTGCTTTTGGCACTCGGCAACAAGAAGTTCTACAACGCCACCA 238918 Query 243662 ACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGC 243721 |||| || | ||| |||||| ||| || || || || || ||||||||||| |||| Sbjct 238919 ACCCATTCGACTTCATGGAGAACATCTCACTGGGCGGCAAGACCAACTTCTTCGAGAAGC 238978 Query 243722 GTGTCAGTGATTATCAACGCCCTGGTGTGATGAAA 243756 |||| | || || ||| | ||||| ||| || Sbjct 238979 GTGTTGGCGAGTACCAAAAGGCGGGTGTCATGGAA 239013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873061850850