Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq31 154 1e-32 seq25 95.1 1e-14 seq64 82.4 8e-11 >seq31 Length=267444 Score = 154 bits (170), Expect = 1e-32 Identities = 361/536 (67%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 ||| | || || |||| || | |||||| | || || |||||| | ||||| || Sbjct 238462 CTGTTCAACGCCATCGATAACATCCCGTGCATCCGTAAGAAGGCTGACTGGGCGTTGCGA 238521 Query 52365 TGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAG 52424 |||||| | | | | |||| | ||| || |||| || |||||| || ||| Sbjct 238522 TGGATCTCGGACAAAAATTCCACATTCGCCCTCCGATTGGTTGCTTTCGCCGCTGTTGAG 238581 Query 52425 GGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATG 52484 || | || |||||||| ||| ||||||||||| | | || | | || | ||| Sbjct 238582 GGTATCTTCTTTTCCGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGTCTCATG 238641 Query 52485 CCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTT 52544 | ||||| || ||| |||||| | || || || || || || ||||||| ||||| Sbjct 238642 GCTGGCCTTACATTCTCGAACGAGCTTATCTCCCGTGATGAGGGTATGCACACAGACTTC 238701 Query 52545 GCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGA-TCCTGAG 52603 || || ||| | | ||| | ||| | || ||| || ||| | | ||| Sbjct 238702 GCCTGTCTCCTGTTCT---CGCACTTGAAGAACAAGCCAGATCAGG-CACTTGTGCAGAG 238757 Query 52604 CATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGA 52663 ||| || ||||| || ||||| || ||||||| | || | || ||||| | | Sbjct 238758 CATCATCGTTGAGGCAGTTGCTATTGAGCAGGAGTTCCTCACAGATGCTCTGCCATGCAA 238817 Query 52664 GCTGCTGGGCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTC 52722 ||| || ||||||||||| ||| ||||| | ||||||||||| ||||| || || | Sbjct 238818 GCTTCTCGGCATGAACGC-TGGTCTCATGTCACAATACATCGAGTTCGTGGCCGACCGCC 238876 Query 52723 TGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATG 52781 || | || ||| |||| | | |||| || |||||| ||| || || || || ||| Sbjct 238877 TGCTTTTGGCACTC-GGCAACAAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 238935 Query 52782 AACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||| || || | |||||||||||||| ||||||||||| || |||||||| Sbjct 238936 GAGAACATCTCACTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 238991 >seq25 Length=313491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||||| | || || |||||||| || || || | | Sbjct 101727 CTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTGCCTGCGAA 101786 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATT 138541 ||| | ||||| ||||||||||| ||||| || ||||| ||| || | ||| ||| Sbjct 101787 GATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTTACATT 101846 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 | || | ||||| | ||||||||||||| || | || || ||||||| Sbjct 101847 G-TCAATCGTGTCAGAAGACTCCACCTCGAGGGTGATTGTCTTGCCAGTCA 101896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || || || | | | |||||||| || ||||||||||| Sbjct 101235 GCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGA 101294 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || ||||| | |||| |||||||| ||||| || || Sbjct 101295 AAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 101354 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || || ||| | || | |||| ||| || | ||||| | || ||| Sbjct 101355 GATGCCCTCCTTATC-TTGAATCTTCGACTTAACGTTG-TCGATAGTGTCTGAAGATTCC 101412 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | || || || || || || || ||||| || |||||| Sbjct 101413 ACCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||||| | || || ||||| || || || |||| Sbjct 101497 GATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 101556 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 101557 AAGATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 101615 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||| ||||||| || | || || || |||| || | Sbjct 101616 GTTG-TCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCT 101674 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 101675 TGACGAAGATCTGCAT 101690 >seq64 Length=168546 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| || ||| || || || || || || |||| ||| Sbjct 20796 CCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGA 20737 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGT 138543 | | |||||| |||||||| || || || || ||||| ||| || | || |||| Sbjct 20736 TCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTG- 20678 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||||| | ||||| || |||| ||| | || || ||||| || || ||||| Sbjct 20677 TCGATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACG 20618 Query 138604 AA 138605 || Sbjct 20617 AA 20616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259354189520