Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq25 120 3e-22
seq64 107 2e-18
seq31 98.7 9e-16
>seq25
Length=313491
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||| | |||| ||| || || || || || ||||| ||||
Sbjct 101464 CCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTG 101523
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| |||||| |||||||| ||||| ||
Sbjct 101524 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 101583
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || ||| ||||| |||| || | ||||||| ||| ||
Sbjct 101584 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCAATCGTGTCCGACGACTCAAC 101642
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||||| || || || || ||||||||
Sbjct 101643 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| || | |||||||| || || || ||||| ||
Sbjct 101236 CCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAA 101295
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || |||||| |||| | |||||||| || || ||
Sbjct 101296 AGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 101355
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| || || ||| ||| | |||| |||| ||||| | | || ||
Sbjct 101356 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTG-TCGATAGTGTCTGAAGATTCCAC 101414
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| || | || |||||||| || || || ||||| || ||||||
Sbjct 101415 CTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || ||||| ||||| |||| | |||||| ||| || ||||| || || ||| |
Sbjct 101727 CTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTGCCTGCGAA 101786
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
|||||| |||||||| || ||||| || |||||||||||| ||| || ||| | |
Sbjct 101787 GATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTTACATT 101846
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
|| | ||||| | | ||| || |||| ||| | || ||||| ||||
Sbjct 101847 GTCAATCGTGTCAGAAGACTCCACCTCGAGGGTGATTGTCTTGCCAGTCA 101896
>seq64
Length=168546
Score = 107 bits (118), Expect = 2e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| || || ||||| ||| || ||||| ||||| ||| |||||
Sbjct 20794 TTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATC 20735
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| || || || |||||||||||||| ||| || ||||| | |||
Sbjct 20734 AAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCG 20675
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| |||||| || ||||||||||| || | || ||||| || || || ||||| ||
Sbjct 20674 ATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 20616
>seq31
Length=267444
Score = 98.7 bits (108), Expect = 9e-16
Identities = 299/454 (66%), Gaps = 31/454 (7%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
|| ||| | ||||||||| || ||||| ||||||| || || ||| || || ||
Sbjct 238555 CGATTGGTTGCTTTCGCCGCTGTTGAGGGTATCTTCTTTTCCGGTTCCTTCGCCGCCATC 238614
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | |||| | || | ||| | ||||| || || |||||||| |||||
Sbjct 238615 TTCTGGCTGAAGAAGCGTGGTCTCATGGCTGGCCTTACATTCTCGAACGAGCTTATCTCC 238674
Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA-CACTAGAGTCGATCA 47317
| || || || ||||||| |||| ||||||||| | | |||| || || ||
Sbjct 238675 CGTGATGAGGGTATGCACACAGACTTCGCCTGTCTCCTGTTCTCGCACTTGAA--GAACA 238732
Query 47318 AA--AGTT---GGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372
| || | | || || || ||| ||| ||| | || || || ||||||
Sbjct 238733 AGCCAGATCAGGCACTTGTGCAG----AGCATCATCGTTG---AGGCAGTTGCTATTGAG 238785
Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAACGCGGAGATGA 47430
|||||| || | || |||||||| || ||| | || |||||||| | | |
Sbjct 238786 CAGGAGTTCCTCACAGATGCTCTGCCATGCAAGCTTC--TCGGCATGAACGCTGGTCTCA 238843
Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCTA-AAGTATC 47484
|| | | |||||||| || || |||||||||||||| | || || | |||
Sbjct 238844 TGTCACAATACATCGAGTTCGTGGCCGACCGCCTGCTTTTGGCACTCGGCAACAAG---- 238899
Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544
||| | ||| || || || |||||||| || ||| | ||||| || || | ||||
Sbjct 238900 --AAGTTCTACAACGCCACCAACCCATTCGACTTCATGGAGAACATCTCACTGGGCGGCA 238957
Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||||||||| ||||||||||| || ||||| ||
Sbjct 238958 AGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 238991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497881613840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |