Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25 120 3e-22 seq64 107 2e-18 seq31 98.7 9e-16 >seq25 Length=313491 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | |||| ||| || || || || || ||||| |||| Sbjct 101464 CCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTG 101523 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 101524 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 101583 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||||| |||| || | ||||||| ||| || Sbjct 101584 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCAATCGTGTCCGACGACTCAAC 101642 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||||| || || || || |||||||| Sbjct 101643 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | |||||||| || || || ||||| || Sbjct 101236 CCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAA 101295 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| |||| | |||||||| || || || Sbjct 101296 AGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 101355 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| || || ||| ||| | |||| |||| ||||| | | || || Sbjct 101356 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTG-TCGATAGTGTCTGAAGATTCCAC 101414 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || |||||||| || || || ||||| || |||||| Sbjct 101415 CTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| |||| | |||||| ||| || ||||| || || ||| | Sbjct 101727 CTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTGCCTGCGAA 101786 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 |||||| |||||||| || ||||| || |||||||||||| ||| || ||| | | Sbjct 101787 GATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTTACATT 101846 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||||| | | ||| || |||| ||| | || ||||| |||| Sbjct 101847 GTCAATCGTGTCAGAAGACTCCACCTCGAGGGTGATTGTCTTGCCAGTCA 101896 >seq64 Length=168546 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| || || ||||| ||| || ||||| ||||| ||| ||||| Sbjct 20794 TTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATC 20735 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || |||||||||||||| ||| || ||||| | ||| Sbjct 20734 AAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCG 20675 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||| || ||||||||||| || | || ||||| || || || ||||| || Sbjct 20674 ATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 20616 >seq31 Length=267444 Score = 98.7 bits (108), Expect = 9e-16 Identities = 299/454 (66%), Gaps = 31/454 (7%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 || ||| | ||||||||| || ||||| ||||||| || || ||| || || || Sbjct 238555 CGATTGGTTGCTTTCGCCGCTGTTGAGGGTATCTTCTTTTCCGGTTCCTTCGCCGCCATC 238614 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | |||| | || | ||| | ||||| || || |||||||| ||||| Sbjct 238615 TTCTGGCTGAAGAAGCGTGGTCTCATGGCTGGCCTTACATTCTCGAACGAGCTTATCTCC 238674 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA-CACTAGAGTCGATCA 47317 | || || || ||||||| |||| ||||||||| | | |||| || || || Sbjct 238675 CGTGATGAGGGTATGCACACAGACTTCGCCTGTCTCCTGTTCTCGCACTTGAA--GAACA 238732 Query 47318 AA--AGTT---GGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372 | || | | || || || ||| ||| ||| | || || || |||||| Sbjct 238733 AGCCAGATCAGGCACTTGTGCAG----AGCATCATCGTTG---AGGCAGTTGCTATTGAG 238785 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAACGCGGAGATGA 47430 |||||| || | || |||||||| || ||| | || |||||||| | | | Sbjct 238786 CAGGAGTTCCTCACAGATGCTCTGCCATGCAAGCTTC--TCGGCATGAACGCTGGTCTCA 238843 Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCTA-AAGTATC 47484 || | | |||||||| || || |||||||||||||| | || || | ||| Sbjct 238844 TGTCACAATACATCGAGTTCGTGGCCGACCGCCTGCTTTTGGCACTCGGCAACAAG---- 238899 Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544 ||| | ||| || || || |||||||| || ||| | ||||| || || | |||| Sbjct 238900 --AAGTTCTACAACGCCACCAACCCATTCGACTTCATGGAGAACATCTCACTGGGCGGCA 238957 Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||| ||||||||||| || ||||| || Sbjct 238958 AGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTA 238991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497881613840