Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 3e-15 seq64 89.7 5e-13 >seq25 Length=313491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | |||||| | ||||| || || ||||| ||||| || || || || Sbjct 101236 CCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTC--TG 101293 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | | ||| || | || || || ||| | || | || |||||||| || | Sbjct 101294 AAAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTG 101353 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || |||||||||| | || | | | || | || | ||||| ||||| || Sbjct 101354 GGATGCCCTCCTTATCTTGAA-TCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCC 101412 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || |||||||| || || || ||||| |||||||| Sbjct 101413 ACCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462 >seq64 Length=168546 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||| || ||||||||||| |||||||| || || ||||| || Sbjct 20752 TGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATC 20693 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || | ||||||| ||||||||||||||| || | || ||||| Sbjct 20692 TTGCTCTTGACATTGTCGATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCA 20633 Query 45315 GTTAGAGTTTTTACAAA 45331 || || || ||||| || Sbjct 20632 GTGAGGGTCTTTACGAA 20616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000425830360