Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq25 136 4e-27
seq64 127 2e-24
seq12 105 8e-18
seq269 96.9 4e-15
>seq25
Length=313491
Score = 136 bits (150), Expect = 4e-27
Identities = 147/192 (77%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||| || ||||| | || || |||||||||||||||||
Sbjct 101500 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 101559
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| |||||||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 101560 ATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGTT 101618
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| ||| || || || | |||||||| ||||| |||| || || ||
Sbjct 101619 GTCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 101678
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 101679 GAAGATCTGCAT 101690
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||||||||| |||| ||| |||||| ||||| |||||||| || || || || |
Sbjct 101248 CGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGTGTCCGGCCA 101307
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| || ||||| || | ||||||||||| | || | || ||||||
Sbjct 101308 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTA 101367
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|| |||||| ||| | ||| | | | ||||| |||||||| || | || ||
Sbjct 101368 TCTTGAATCTTCGACTT-AACGTTGTCGATAGTGTCTGAAGATTCCACCTCGAGTGTAAT 101426
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| || || || || ||||| ||||||||
Sbjct 101427 TGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462
Score = 113 bits (124), Expect = 5e-20
Identities = 130/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| || || ||||||||| || ||||| | || ||||||||||||||
Sbjct 101722 GTGCTCTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTGCCT 101781
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
||||| ||||||||||||||||| | || | | |||||||||| |||||| ||||
Sbjct 101782 GCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTT 101841
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | | |||||| || ||||| || | ||||| || ||||| ||||
Sbjct 101842 ACATTGTCAATCGTGTCAGAAGACTCCACCTCGAGGGTGATTGTCTTGCCAGTCA 101896
>seq64
Length=168546
Score = 127 bits (140), Expect = 2e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| || || |||||||| || |||||||| | || || |||||||| |||||||| |
Sbjct 20796 CCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGA 20737
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | || ||||||||| |||||| |||||| |
Sbjct 20736 TCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGT 20677
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||||| || || || || | ||||||||| ||||| || || || || || |
Sbjct 20676 CGATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGA 20617
Query 46584 AGATTTGC 46591
|| | |||
Sbjct 20616 AGCTGTGC 20609
>seq12
Length=397188
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | || |||||||| ||||| |||||||| || || ||||| | || |||
Sbjct 53194 ACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCG 53253
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||||||||||||||| |||| |||||||||||| | || | | |||||||||
Sbjct 53254 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATCCCCTCCTTGTC 53309
>seq269
Length=9048
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/104 (82%), Gaps = 4/104 (4%)
Strand=Plus/Minus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC---GAGCTGCTTGCCGGCGAATATC 46465
||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||| |||
Sbjct 5530 TGGATGTTGTAGTCGGAGAGGGTGCGGTCGTCTTCCTCGAGCTGCTTGCTGGCGAAAATC 5471
Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|||||||||||||| | || | || ||||||||| ||||||
Sbjct 5470 AAGCGCTGCTGGTCTGGTGGAATTCTTTCCTTGTCC-GGATCTT 5428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234930849320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |