Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq31 282 4e-71 seq25 125 7e-24 seq64 95.1 1e-14 seq12 84.2 2e-11 >seq31 Length=267444 Score = 282 bits (312), Expect = 4e-71 Identities = 578/847 (68%), Gaps = 19/847 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || ||||| || ||||| || || || || || || ||| || ||| | Sbjct 238997 TTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGTGAGATGTTC 238938 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACG 132720 ||| || || || ||||||| | ||||||| | |||| |||||| | | | Sbjct 238937 TCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGA---GTGCCAAA 238881 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | |||||||||||||||||||||||| |||||| | || | || || Sbjct 238880 AGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTTCATGCCGAGA 238821 Query 132781 AGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || ||| ||||| || || ||||| || ||||| || || || || || || Sbjct 238820 AGCTTGCAT-GGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGCCTCAACGAT 238762 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGT-TGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| | || | ||| | || | | | | | ||| ||| ||||| | || | Sbjct 238761 GATGCTCTGCACAAGTGCCT-GATCTGGCTTGTTCTTCAAGTGCGAGAACAGGAGACAGG 238703 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | ||||| |||| ||||| || | ||| || || ||||| ||| || | ||| | Sbjct 238702 CGAAGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAATGTAAGGCCAG 238643 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||||| || || || || ||||| || ||||||||||| || |||||||||| | Sbjct 238642 CCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAAAAGAAGATAC 238583 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||| || || |||||||| |||| || | |||| |||| | |||| | ||||| Sbjct 238582 CCTCAACAGCGGCGAAAGCAACCAATCGGAGGGCGAATGTGGAATTTTTGTCCGAGATCC 238523 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | |||| |||||| || ||||| | || |||||| || | ||||||||||| |||| Sbjct 238522 ATCGCAACGCCCAGTCAGCCTTCTTACGGATGCACGGGATGTTATCGATGGCGTTGAACA 238463 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 | | ||| || | || ||| | || ||||| || ||| || || |||| Sbjct 238462 GA--TATGTTCGCTGCTTTGGCTCGCTGATATATGTGTCAATAAGGAGGGAGTATGTTTC 238405 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||||| | ||||||||| ||| || || || || ||||| || ||||| | ||| Sbjct 238404 GGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGTGCCTCTGGGATCTG 238345 Query 133257 CACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 || || |||| ||| |||||||| || || |||||||| |||||||| || |||| Sbjct 238344 AACCTC-AGAGCTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTCTGATGCTGCGA 238286 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGT 133372 | || || || ||||| |||||| ||||||| || || | ||| | ||| | Sbjct 238285 AGAAAGCGAGAACGTGTGAGATGAAGAATCGCTCGTCATCATTGAGTCGCTTGTTCCAAT 238226 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 || || ||||||||||| || | |||||| ||||||| ||||| |||||||| || | Sbjct 238225 CGTGCAGATCCTTGGACAGATCAATCTCCTCTGCGGTCCAGAACGATGCCTCGGCCTTCT 238166 Query 133433 TGTACAT 133439 ||||||| Sbjct 238165 TGTACAT 238159 >seq25 Length=313491 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| |||| || ||| | | Sbjct 101690 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 101631 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||| || || ||||||| Sbjct 101630 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCCGACCA 101572 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | |||||||||| ||||||||| Sbjct 101571 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCAGCGACTACAA 101512 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | ||||| || | ||||| || Sbjct 101511 CATCCAGAAGGAATCCACGCTACACCTTGTGCTCCG 101476 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGA 38326 || ||||| || |||||| |||| || ||| | | |||| | || || | |||||| Sbjct 101894 ACTGGCAAGACAATCACCCTCGAGGTGGAGTCTTCTGACACGATTGACAATG--TAAAGA 101837 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| ||||| | ||||| ||||| | || | ||| |||| Sbjct 101836 GCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCAGGCA 101777 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTG 38444 | ||||| || || | |||||||||| |||||||||||| || ||||| ||| || || Sbjct 101776 AGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAACATTCAGAAGGAGAGC-ACCCTC 101718 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| || | || || Sbjct 101717 CACCTTGTCCTTCGTCTGCGTGGTGG 101692 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || ||||| || || || |||| || || | | Sbjct 101462 ATGCAAATATTTGTGAAGACACTTACCGGCAAGACAATTACACTCGAGGTGGAATCTTCA 101403 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| || || | || || ||||| || || | ||||| Sbjct 101402 GACACTATCGACAACG-TTAAGTCGAAGATTCAAGATAAGGAGGGCATCCCACCTGACCA 101344 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || || | || || || |||||||| Sbjct 101343 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGGACACTTTCAGACTACAA 101284 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | || ||||| |||||| |||| || | || |||| Sbjct 101283 CATCCAGAAGGAGTCTACCCTGCACTTGGTGTTGCGCCTGCGTGGTGGCC 101234 >seq64 Length=168546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 |||||||| || ||||| ||||| |||||||| |||| |||||| | | ||||| | | Sbjct 20616 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAAGTCGAGTCTAGCGACACCATC 20675 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||| ||||| | ||||| ||||| Sbjct 20676 GACAATG--TCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAGCAGCGTT 20733 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || ||||| || || | ||||| || ||||||||||| || | Sbjct 20734 TGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTGTCGGACTACAACATTCAGA 20793 Query 38431 AGG 38433 ||| Sbjct 20794 AGG 20796 >seq12 Length=397188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || | ||||| ||||| || || | ||| ||||| ||||| || Sbjct 53309 GACAAGGAGGGGATCCCACCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 53250 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 || | ||||||||| |||||||||||||| ||||| ||| || || ||| | || || Sbjct 53249 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGAGC-ACCCTCCATCTCGTCCT 53191 Query 38456 GCGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 53190 CCGTCTGCGTGGTGG 53176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169730189440