Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq31 282 4e-71
seq25 125 7e-24
seq64 95.1 1e-14
seq12 84.2 2e-11
>seq31
Length=267444
Score = 282 bits (312), Expect = 4e-71
Identities = 578/847 (68%), Gaps = 19/847 (2%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
||||| || ||||| || ||||| || || || || || || ||| || ||| |
Sbjct 238997 TTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGTGAGATGTTC 238938
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACG 132720
||| || || || ||||||| | ||||||| | |||| |||||| | | |
Sbjct 238937 TCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGA---GTGCCAAA 238881
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780
||||| | |||||||||||||||||||||||| |||||| | || | || ||
Sbjct 238880 AGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTTCATGCCGAGA 238821
Query 132781 AGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839
|| ||| ||||| || || ||||| || ||||| || || || || || ||
Sbjct 238820 AGCTTGCAT-GGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGCCTCAACGAT 238762
Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGT-TGCACCAAATGCTTGAACATCAAGCAAG 132898
||| | || | ||| | || | | | | | ||| ||| ||||| | || |
Sbjct 238761 GATGCTCTGCACAAGTGCCT-GATCTGGCTTGTTCTTCAAGTGCGAGAACAGGAGACAGG 238703
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
| ||||| |||| ||||| || | ||| || || ||||| ||| || | ||| |
Sbjct 238702 CGAAGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAATGTAAGGCCAG 238643
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
|||||| || || || || ||||| || ||||||||||| || |||||||||| |
Sbjct 238642 CCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAAAAGAAGATAC 238583
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078
|||| || || |||||||| |||| || | |||| |||| | |||| | |||||
Sbjct 238582 CCTCAACAGCGGCGAAAGCAACCAATCGGAGGGCGAATGTGGAATTTTTGTCCGAGATCC 238523
Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138
| |||| |||||| || ||||| | || |||||| || | ||||||||||| ||||
Sbjct 238522 ATCGCAACGCCCAGTCAGCCTTCTTACGGATGCACGGGATGTTATCGATGGCGTTGAACA 238463
Query 133139 AACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196
| | ||| || | || ||| | || ||||| || ||| || || ||||
Sbjct 238462 GA--TATGTTCGCTGCTTTGGCTCGCTGATATATGTGTCAATAAGGAGGGAGTATGTTTC 238405
Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256
||||| | ||||||||| ||| || || || || ||||| || ||||| | |||
Sbjct 238404 GGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGTGCCTCTGGGATCTG 238345
Query 133257 CACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315
|| || |||| ||| |||||||| || || |||||||| |||||||| || ||||
Sbjct 238344 AACCTC-AGAGCTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTCTGATGCTGCGA 238286
Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGT 133372
| || || || ||||| |||||| ||||||| || || | ||| | ||| |
Sbjct 238285 AGAAAGCGAGAACGTGTGAGATGAAGAATCGCTCGTCATCATTGAGTCGCTTGTTCCAAT 238226
Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432
|| || ||||||||||| || | |||||| ||||||| ||||| |||||||| || |
Sbjct 238225 CGTGCAGATCCTTGGACAGATCAATCTCCTCTGCGGTCCAGAACGATGCCTCGGCCTTCT 238166
Query 133433 TGTACAT 133439
|||||||
Sbjct 238165 TGTACAT 238159
>seq25
Length=313491
Score = 125 bits (138), Expect = 7e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| ||||||||| |||| || ||| | |
Sbjct 101690 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 101631
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | ||||| ||||| || || |||||||
Sbjct 101630 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCCGACCA 101572
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| ||||| || || | |||||||||| |||||||||
Sbjct 101571 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCAGCGACTACAA 101512
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| |||||| | ||||| || | ||||| ||
Sbjct 101511 CATCCAGAAGGAATCCACGCTACACCTTGTGCTCCG 101476
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGA 38326
|| ||||| || |||||| |||| || ||| | | |||| | || || | ||||||
Sbjct 101894 ACTGGCAAGACAATCACCCTCGAGGTGGAGTCTTCTGACACGATTGACAATG--TAAAGA 101837
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| ||||| | ||||| ||||| | || | ||| ||||
Sbjct 101836 GCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCAGGCA 101777
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTG 38444
| ||||| || || | |||||||||| |||||||||||| || ||||| ||| || ||
Sbjct 101776 AGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAACATTCAGAAGGAGAGC-ACCCTC 101718
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| || | || ||
Sbjct 101717 CACCTTGTCCTTCGTCTGCGTGGTGG 101692
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||||||||| || || || || || ||||| || || || |||| || || | |
Sbjct 101462 ATGCAAATATTTGTGAAGACACTTACCGGCAAGACAATTACACTCGAGGTGGAATCTTCA 101403
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| |||| || || | || || ||||| || || | |||||
Sbjct 101402 GACACTATCGACAACG-TTAAGTCGAAGATTCAAGATAAGGAGGGCATCCCACCTGACCA 101344
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || ||||| || || | || || || ||||||||
Sbjct 101343 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGGACACTTTCAGACTACAA 101284
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| | || ||||| |||||| |||| || | || ||||
Sbjct 101283 CATCCAGAAGGAGTCTACCCTGCACTTGGTGTTGCGCCTGCGTGGTGGCC 101234
>seq64
Length=168546
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
|||||||| || ||||| ||||| |||||||| |||| |||||| | | ||||| | |
Sbjct 20616 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAAGTCGAGTCTAGCGACACCATC 20675
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| ||||| ||||| | ||||| |||||
Sbjct 20676 GACAATG--TCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAGCAGCGTT 20733
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || ||||| || || | ||||| || ||||||||||| || |
Sbjct 20734 TGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTGTCGGACTACAACATTCAGA 20793
Query 38431 AGG 38433
|||
Sbjct 20794 AGG 20796
>seq12
Length=397188
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || || | ||||| ||||| || || | ||| ||||| ||||| ||
Sbjct 53309 GACAAGGAGGGGATCCCACCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 53250
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
|| | ||||||||| |||||||||||||| ||||| ||| || || ||| | || ||
Sbjct 53249 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGAGC-ACCCTCCATCTCGTCCT 53191
Query 38456 GCGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 53190 CCGTCTGCGTGGTGG 53176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169730189440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |