Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 seq64 86.0 4e-12 seq12 84.2 1e-11 >seq25 Length=313491 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| ||| | || |||| || ||||| || ||||| || Sbjct 101499 TTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 101558 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||||| |||||| Sbjct 101559 GATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTT 101618 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | |||||| |||| ||| ||||| || || || | ||||| || Sbjct 101619 GTCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 101678 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 101679 GAAGATCTGCATA 101691 >seq64 Length=168546 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| |||||||| || | || |||| || ||||| |||||||| || || Sbjct 20794 TTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATC 20735 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | || |||||||| | || | ||||||||||| ||||| ||||| || | Sbjct 20734 AAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGAC--AT--T 20679 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || | | ||| || |||| || ||||| || || ||||| ||||| || Sbjct 20678 GTCGATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTAC 20619 Query 34970 AAAGATCTGC-ATAT 34983 ||| | ||| |||| Sbjct 20618 GAAGCTGTGCGATAT 20604 >seq12 Length=397188 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| |||||||| ||| | || |||| || ||||| || ||| Sbjct 53206 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 53265 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || || || |||||||| | || | |||||||||||| Sbjct 53266 GCGAAGATCAGGCGCTGCTGGTCCGGTGGGATCCCCTCCTTGTC 53309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631657372248