Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 152 6e-31 seq31 132 6e-25 seq85 120 4e-21 seq8 116 5e-20 seq155 100 3e-15 seq97 86.0 8e-11 >seq6 Length=666260 Score = 152 bits (168), Expect = 6e-31 Identities = 145/183 (79%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | |||||| || |||| ||| | ||||| || | ||||| ||| Sbjct 211171 CGACATCGAGGACTGGGACCAGAAGTTCATGC-AGGTCGACCAAGAGATGCTCTTCGAGA 211113 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||||||||||||| | ||||||||| | |||||||| | || |||||| | | Sbjct 211112 TCATCCTCGCCGCCAACTACATGGACATCAAGGCCCTGCTCGACGTCGGCTGCAAGACCG 211053 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | |||||||||||||||||||||||||| ||||||||||| ||||| || |||||| || Sbjct 211052 TCGCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGAAAGACATTCAACATCCAGA 210993 Query 1592298 ACG 1592300 ||| Sbjct 210992 ACG 210990 >seq31 Length=267444 Score = 132 bits (146), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||||||||| || ||| |||||| |||||||||||||| | || ||||| Sbjct 239001 CGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGTGAGAT 238942 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | ||| ||||||| | |||||| ||| | | ||||| | | Sbjct 238941 GTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAA 238882 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||||||||||| || ||||||||||| || ||||||| || ||||||||||||| Sbjct 238881 AAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTTCATGCCGAG 238822 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| ||||| | || | | ||||| | ||| || | || ||||| ||||| Sbjct 238821 AAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGCCTCAACGAT 238762 Query 868930 GAT 868932 ||| Sbjct 238761 GAT 238759 >seq85 Length=115538 Score = 120 bits (132), Expect = 4e-21 Identities = 299/454 (66%), Gaps = 0/454 (0%) Strand=Plus/Plus Query 1573783 GGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCCGTCG 1573842 || |||| || || ||||| | | ||||||||||| || |||||| | || ||| Sbjct 66924 GGGTCGAGAAATACCGCCCCGTCTTCCTCGACGACATAGTTGGCAACACCGAAACCATCG 66983 Query 1573843 CCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGC 1573902 |||| | | || |||||| |||||||| || || | | ||| || Sbjct 66984 AGCGCCTCAAAATCATCGCCAAAGACGGCAACATGCCCCACGTCATCATCAGCGGTATGC 67043 Query 1573903 CCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCG 1573962 |||||| ||||||||||| | || |||||| || || | | ||| | || Sbjct 67044 CCGGCATAGGCAAGACCACATCCGTCCTGTGTCTCGCACGACAATTGCTCGGCCCAGCAT 67103 Query 1573963 CCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCA 1574022 | ||||| ||||||||||| ||||| || ||||||||||| ||||||||||| | | Sbjct 67104 ATAAGGAGGCAGTGCTCGAACTGAACGCATCAGACGAGCGCGGAATCGACGTCGTGAGGA 67163 Query 1574023 AGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGA 1574082 | | ||||| | ||| || | | || || || | ||||| || ||| | Sbjct 67164 ACAGGATCAAAGGCTTCGCACAGAAAAAGGTCACACTCCCCGCTGGACGGCAAAAGATTG 67223 Query 1574083 TCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCA 1574142 | || || || ||||| ||| | | ||| | || |||||||| || || |||| Sbjct 67224 TGATTCTAGATGAGGCGGACAGTATGACGAGCGGAGCACAGCAGGCTCTACGACGGACCA 67283 Query 1574143 TGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCA 1574202 |||||| ||| || |||||| || ||||| | |||||||| |||| | | ||| Sbjct 67284 TGGAAATCTACAGCAGCACGACCCGTTTTGCTTTCGCGTGCAATCAGTCGAATAAGATCA 67343 Query 1574203 TCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 ||||| | || || || ||||| ||||| || Sbjct 67344 TCGAGCCGCTTCAGTCACGGTGCGCGATTCTACG 67377 >seq8 Length=557162 Score = 116 bits (128), Expect = 5e-20 Identities = 210/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| | || | | ||| || || || |||||||| Sbjct 460249 CTGGTCGACGTAGCGAGCAGTGTTGTTGTACACTCTCAACATCGGTACAAGACCGTTGGA 460308 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAAAGC 1630183 |||||||||||| | | |||| || | || || | ||||| | ||| | | Sbjct 460309 TGTGCCGTTGGTGCCACCGATATAGGAACCAGTAGCACGGATATTGTGAACATGCAGA-C 460367 Query 1630184 CGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCC 1630242 | || ||||| || ||||||||| | || || ||| ||||| |||||||||||||| Sbjct 460368 CAATACCGCCAGCGTTCTTGGAGATCATAGCACA-TGTCTTGAGGGTGTCGTAGATGCCG 460426 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302 ||||| ||| |||||||| | | | ||||| || | || | |||| || Sbjct 460427 TCGATGCTGTCATCCTTCATGGCAATCAAGAAGCAGGAAGCCAACTGGGCTTGCGGTGTT 460486 Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAG 1630362 || ||| |||| ||||| |||| ||| ||||| ||| | |||||||| || ||| Sbjct 460487 CCAGCGCTGAAAAGCGTTGGCGACGCATGTGTGAAGTACTTCAGCGACATGTAGTTGTAT 460546 Query 1630363 GT 1630364 || Sbjct 460547 GT 460548 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||||| ||||| ||||| || ||| |||||||||||||||||||| || Sbjct 460113 TCCAAAGGGCGTAGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGA 460172 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| | | | | | ||||||||||| ||||| |||||| ||||||||| || Sbjct 460173 GGTCCATGAACTGAAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTG 460232 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 460233 GGCGCTTGTTGCCACC 460248 >seq155 Length=44616 Score = 100 bits (110), Expect = 3e-15 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 19037 GCGCCAAGAG-GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAG 19095 ||| |||||| ||||||||||| || || ||||| |||||| ||| ||| || ||| Sbjct 27318 GCGACAAGAGCGACAGCATCGGTGGGACAGTGACCTGCGTGATTCGAAACTGTCCTTCAG 27377 Query 19096 GCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGA 19155 | | || ||||| ||||| || ||| | ||||| | ||||| ||||| ||||| | Sbjct 27378 GTTTAGGAGAGCCTTGCTTCGATAAGCTAGAGGCGACCCTCGCACACGCAATGCTCAGCA 27437 Query 19156 TCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201 |||| || || ||||| |||||| |||| || ||| |||||||| Sbjct 27438 TCCCAGCGACGAAGGGCTTCGAGTTTGGTTCAGGCTTTGGCGGGTGC 27484 >seq97 Length=101030 Score = 86.0 bits (94), Expect = 8e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1852471 TTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAG 1852530 || |||||| || ||| | |||| |||||||||| | |||| ||||| || | ||| Sbjct 4345 TTTGACCAGCTCAATCGGTGCCTTGAGGTTGTCGAGGAAGCCGTGGACGTCCGCTAGGAG 4286 Query 1852531 GATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTA 1852590 || ||| || ||||| || || || ||||| | |||| ||||| || ||||| Sbjct 4285 GACCTTCACGTTGCAGCCAGCAGCCAGGAACTCGGCGATCTTGAGCATGGGTACGAAGTA 4226 Query 1852591 GCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 ||| ||| || ||||| || | ||||||||||| || || | || || ||||| Sbjct 4225 GCCGCAGTGGGGTTTGCCGGTGGTGGCCGTGCCCCAGTAGATCTTGAGAGGACGCTC 4169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107098906240647