Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 152 6e-31
seq31 132 6e-25
seq85 120 4e-21
seq8 116 5e-20
seq155 100 3e-15
seq97 86.0 8e-11
>seq6
Length=666260
Score = 152 bits (168), Expect = 6e-31
Identities = 145/183 (79%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || |||| ||| | ||||| || | ||||| |||
Sbjct 211171 CGACATCGAGGACTGGGACCAGAAGTTCATGC-AGGTCGACCAAGAGATGCTCTTCGAGA 211113
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| |||||||||||||||||| | ||||||||| | |||||||| | || |||||| | |
Sbjct 211112 TCATCCTCGCCGCCAACTACATGGACATCAAGGCCCTGCTCGACGTCGGCTGCAAGACCG 211053
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| |||||||||||||||||||||||||| ||||||||||| ||||| || |||||| ||
Sbjct 211052 TCGCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGAAAGACATTCAACATCCAGA 210993
Query 1592298 ACG 1592300
|||
Sbjct 210992 ACG 210990
>seq31
Length=267444
Score = 132 bits (146), Expect = 6e-25
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||||||||| || ||| |||||| |||||||||||||| | || |||||
Sbjct 239001 CGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGTGAGAT 238942
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809
|||||| | ||| ||||||| | |||||| ||| | | ||||| | |
Sbjct 238941 GTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAA 238882
Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||||
Sbjct 238881 AAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTTCATGCCGAG 238822
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
||| ||||| | || | | ||||| | ||| || | || ||||| |||||
Sbjct 238821 AAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGCCTCAACGAT 238762
Query 868930 GAT 868932
|||
Sbjct 238761 GAT 238759
>seq85
Length=115538
Score = 120 bits (132), Expect = 4e-21
Identities = 299/454 (66%), Gaps = 0/454 (0%)
Strand=Plus/Plus
Query 1573783 GGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCCGTCG 1573842
|| |||| || || ||||| | | ||||||||||| || |||||| | || |||
Sbjct 66924 GGGTCGAGAAATACCGCCCCGTCTTCCTCGACGACATAGTTGGCAACACCGAAACCATCG 66983
Query 1573843 CCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGC 1573902
|||| | | || |||||| |||||||| || || | | ||| ||
Sbjct 66984 AGCGCCTCAAAATCATCGCCAAAGACGGCAACATGCCCCACGTCATCATCAGCGGTATGC 67043
Query 1573903 CCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCG 1573962
|||||| ||||||||||| | || |||||| || || | | ||| | ||
Sbjct 67044 CCGGCATAGGCAAGACCACATCCGTCCTGTGTCTCGCACGACAATTGCTCGGCCCAGCAT 67103
Query 1573963 CCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCA 1574022
| ||||| ||||||||||| ||||| || ||||||||||| ||||||||||| | |
Sbjct 67104 ATAAGGAGGCAGTGCTCGAACTGAACGCATCAGACGAGCGCGGAATCGACGTCGTGAGGA 67163
Query 1574023 AGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGA 1574082
| | ||||| | ||| || | | || || || | ||||| || ||| |
Sbjct 67164 ACAGGATCAAAGGCTTCGCACAGAAAAAGGTCACACTCCCCGCTGGACGGCAAAAGATTG 67223
Query 1574083 TCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCA 1574142
| || || || ||||| ||| | | ||| | || |||||||| || || ||||
Sbjct 67224 TGATTCTAGATGAGGCGGACAGTATGACGAGCGGAGCACAGCAGGCTCTACGACGGACCA 67283
Query 1574143 TGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCA 1574202
|||||| ||| || |||||| || ||||| | |||||||| |||| | | |||
Sbjct 67284 TGGAAATCTACAGCAGCACGACCCGTTTTGCTTTCGCGTGCAATCAGTCGAATAAGATCA 67343
Query 1574203 TCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236
||||| | || || || ||||| ||||| ||
Sbjct 67344 TCGAGCCGCTTCAGTCACGGTGCGCGATTCTACG 67377
>seq8
Length=557162
Score = 116 bits (128), Expect = 5e-20
Identities = 210/302 (70%), Gaps = 4/302 (1%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| | || | | ||| || || || ||||||||
Sbjct 460249 CTGGTCGACGTAGCGAGCAGTGTTGTTGTACACTCTCAACATCGGTACAAGACCGTTGGA 460308
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAAAGC 1630183
|||||||||||| | | |||| || | || || | ||||| | ||| | |
Sbjct 460309 TGTGCCGTTGGTGCCACCGATATAGGAACCAGTAGCACGGATATTGTGAACATGCAGA-C 460367
Query 1630184 CGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCC 1630242
| || ||||| || ||||||||| | || || ||| ||||| ||||||||||||||
Sbjct 460368 CAATACCGCCAGCGTTCTTGGAGATCATAGCACA-TGTCTTGAGGGTGTCGTAGATGCCG 460426
Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302
||||| ||| |||||||| | | | ||||| || | || | |||| ||
Sbjct 460427 TCGATGCTGTCATCCTTCATGGCAATCAAGAAGCAGGAAGCCAACTGGGCTTGCGGTGTT 460486
Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAG 1630362
|| ||| |||| ||||| |||| ||| ||||| ||| | |||||||| || |||
Sbjct 460487 CCAGCGCTGAAAAGCGTTGGCGACGCATGTGTGAAGTACTTCAGCGACATGTAGTTGTAT 460546
Query 1630363 GT 1630364
||
Sbjct 460547 GT 460548
Score = 93.3 bits (102), Expect = 5e-13
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || ||||| ||||| ||||| || ||| |||||||||||||||||||| ||
Sbjct 460113 TCCAAAGGGCGTAGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGA 460172
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
|||| | | | | | ||||||||||| ||||| |||||| ||||||||| ||
Sbjct 460173 GGTCCATGAACTGAAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTG 460232
Query 1628585 TGCGCTTGCCGCCGCC 1628600
||||||| ||| ||
Sbjct 460233 GGCGCTTGTTGCCACC 460248
>seq155
Length=44616
Score = 100 bits (110), Expect = 3e-15
Identities = 124/167 (74%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 19037 GCGCCAAGAG-GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAG 19095
||| |||||| ||||||||||| || || ||||| |||||| ||| ||| || |||
Sbjct 27318 GCGACAAGAGCGACAGCATCGGTGGGACAGTGACCTGCGTGATTCGAAACTGTCCTTCAG 27377
Query 19096 GCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGA 19155
| | || ||||| ||||| || ||| | ||||| | ||||| ||||| ||||| |
Sbjct 27378 GTTTAGGAGAGCCTTGCTTCGATAAGCTAGAGGCGACCCTCGCACACGCAATGCTCAGCA 27437
Query 19156 TCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201
|||| || || ||||| |||||| |||| || ||| ||||||||
Sbjct 27438 TCCCAGCGACGAAGGGCTTCGAGTTTGGTTCAGGCTTTGGCGGGTGC 27484
>seq97
Length=101030
Score = 86.0 bits (94), Expect = 8e-11
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 1852471 TTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAG 1852530
|| |||||| || ||| | |||| |||||||||| | |||| ||||| || | |||
Sbjct 4345 TTTGACCAGCTCAATCGGTGCCTTGAGGTTGTCGAGGAAGCCGTGGACGTCCGCTAGGAG 4286
Query 1852531 GATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTA 1852590
|| ||| || ||||| || || || ||||| | |||| ||||| || |||||
Sbjct 4285 GACCTTCACGTTGCAGCCAGCAGCCAGGAACTCGGCGATCTTGAGCATGGGTACGAAGTA 4226
Query 1852591 GCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647
||| ||| || ||||| || | ||||||||||| || || | || || |||||
Sbjct 4225 GCCGCAGTGGGGTTTGCCGGTGGTGGCCGTGCCCCAGTAGATCTTGAGAGGACGCTC 4169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107098906240647
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |