Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq40 111 1e-19 seq25 95.1 1e-14 >seq40 Length=240523 Score = 111 bits (122), Expect = 1e-19 Identities = 200/290 (69%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 ||||||| ||||| | || ||| || | || |||||| |||||| ||||| || Sbjct 232392 CAGTCTCGGGGTTCTTGCAGTCCCTGCAGAGGACGAACTTGTTGATGAAGCCATCGAGGT 232333 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 ||| || | ||| || ||||| | ||||||| ||| | || |||| ||| | Sbjct 232332 AGTCTTGCAGCTTCGTGGCCTCGTGTGCACCGTTGATGATCCAGCGATCGTCCTTGGGGT 232273 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | | || || ||||| |||||| | || ||||| |||| | | || || | | Sbjct 232272 CAATGTTGGTCTGGGCGCCAAGCTCGAAGCCAAAGTA-TTTGATG---ACATAGCTTGGC 232217 Query 34499 GTCCAAGCGCCTTGG----CGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 | | |||| |||| ||| | || | |||||||| || |||||||| |||||| Sbjct 232216 GGGCGAGCGAGTTGGTAGGCGACATTGGCAAGGTTGACGACAACGGTCTTGATACCGTTG 232157 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAA 34604 ||||||||||| ||||||| ||| ||| ||| |||||||||||||| Sbjct 232156 CCCTTTCCTTCCACCTTGGACTGGATACGCTCCATCTTGTAGCGGTAGAA 232107 >seq25 Length=313491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || | |||||||| || ||||| |||| ||| || Sbjct 101462 ATGCAAATATTTGTGAAGACACTTACCGGCAAGACAATTACACTCGAGGTGGAATCTTCA 101403 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || ||||||| || || || ||| | || || || Sbjct 101402 GACACTATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAG 101343 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||| ||||| ||||||| | | ||| | | || |||||| Sbjct 101342 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGGACACTTTCAGACTACAAC 101283 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| ||||| ||||||| | ||||| || || Sbjct 101282 ATCCAGAAGGAGTCTACCCTGCACTTGGTGTTGCGCCTGCGTGGTGG 101236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412839129530063