Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq31 89.7 5e-13 seq25 86.0 6e-12 >seq31 Length=267444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 351/541 (65%), Gaps = 17/541 (3%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 ||||||| ||||||| || ||||| | ||||| |||| || ||||| ||| ||||| Sbjct 238466 TCAACGCCATCGATAACATCCCGTGCATCCGTAAGAAGGCTGACTGGGCGTTGCGATGGA 238525 Query 50257 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50316 ||||||| || || ||| || || || || || ||| ||||| ||| Sbjct 238526 TCTCGGACAAAAATTCCACATTCGCCCTCCGATTGGTTGCTTTCGCCGCTGTTGAGGGTA 238585 Query 50317 TGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCC 50375 | || ||||||||| ||| || ||||| || | | || || | | | | | ||| | Sbjct 238586 TCTTCTTTTCCGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGTC-TCATGGCT 238644 Query 50376 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50435 ||||| || || |||||| | || || || || || || |||||||||||||| || Sbjct 238645 GGCCTTACATTCTCGAACGAGCTTATCTCCCGTGATGAGGGTATGCACACAGACTTCGCC 238704 Query 50436 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTA-TCATACGAAACAATTTTGGA--- 50491 ||| || | | | ||| | |||| || | || | | || || || | Sbjct 238705 TGT-----CTCCTGTTCTCGC--ACTTGAAGAACAAGCCAGATCAGGCACTTGTGCAGAG 238757 Query 50492 CATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGC 50551 ||| || || || || | || || | ||||| |||| || ||| | || || Sbjct 238758 CATCATCGTTGAGGCAGTTGCTATTGAGCAGGAGTTCCTCACAGATGCTCT-GCCATGCA 238816 Query 50552 A-TTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGAT 50610 | | | ||||||||||| | | |||| | ||||| ||||| || || ||| | Sbjct 238817 AGCTTCTCGGCATGAACGCTGGTCTCATGTCACAATACATCGAGTTCGTGGCCGACCGCC 238876 Query 50611 TGTTGTTGCAGCTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATG 50669 || | ||| || || |||| ||| | ||| || || ||||| || || ||| Sbjct 238877 TGCTTTTGGCACTCGG-CAACAAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 238935 Query 50670 AATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAA 50729 | ||||| || ||| ||||| || ||||| ||||| | ||||| ||||| ||| || Sbjct 238936 GAGAACATCTCACTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACCAA 238995 Query 50730 A 50730 | Sbjct 238996 A 238996 >seq25 Length=313491 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 ||||| || || | ||||| || || || | ||||| || || || |||||||| || Sbjct 101233 TGGCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCT 101292 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | ||| | || ||||| || |||||||| |||| ||||| ||||| || || Sbjct 101293 GAAAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGT 101352 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || ||||| || || || ||| || || | | || | ||||||| | ||| Sbjct 101353 GGGATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCC 101412 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || | ||||||||||| | ||| || || ||||||||||| Sbjct 101413 ACCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| ||||| | |||| || || || || || || Sbjct 101494 GTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 101553 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 101554 GCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 101613 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | |||||||||||||| || Sbjct 101614 ACGTTGTCAATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 101673 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 101674 TTGACGAAGATCTGCATA 101691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541001561200