Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq31 109 8e-19 >seq31 Length=267444 Score = 109 bits (120), Expect = 8e-19 Identities = 552/868 (64%), Gaps = 20/868 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| |||||||| || ||||| || |||||||| || || || ||||| | Sbjct 239010 CATGACACCCGCCTTTTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 238951 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || ||| || || |||||||| || || || || || || || || || || || Sbjct 238950 CAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 238891 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | | | ||| || | || || || || || |||||| | ||| | || || Sbjct 238890 GAGTGCCAAAAGCAGGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTT 238831 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | || || ||| ||||| || || || ||||| | || || | || || Sbjct 238830 CATGCCGAGAAGCTTGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGC 238771 Query 39553 CTCTGTTATTAT-CGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609 ||| || || | || | | ||| ||| | | | | | | || || || Sbjct 238770 CTCAACGATGATGCTCTGCACAAGTGCCTGATC--TGGCTTGTT-CTTCAAGTGCGAGAA 238714 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 || | ||||||||||| || | |||||||| | || | ||||| || || Sbjct 238713 CAGGAGACAGGCGAAGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAA 238654 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 ||| || |||| ||| ||||||||||| || ||||| || ||||| || || || || || Sbjct 238653 TGTAAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGA 238594 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 ||||||||| || || || || || || ||||| | || || | | | || || Sbjct 238593 AAAGAAGATACCCTCAACAGCGGCGAAAGCAACCAATCGGAGGGCGAATGTGGAAT--TT 238536 Query 39790 ATGT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 ||| ||||| | ||||| ||||| ||||| | || || || | || Sbjct 238535 TTGTCCGAGATCCATCGCAACGCCCAGTCAGCCTTCTTACGGATGCACGGGATGTTATCG 238476 Query 39845 ATAGCATTAAAGAGATAATGTT-TTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || || || || |||| ||||| | | || | | |||||| || || | || Sbjct 238475 ATGGCGTTGAACAGAT-ATGTTCGCTGCTTTGGCTCGCTGATATATGTGTCAATAAGGAG 238417 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || |||| || |||||||| || ||| ||||| || || || || |||| ||| Sbjct 238416 GGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGTGC 238357 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 || | || || ||||| || | || | || | | || || || || || || || Sbjct 238356 CTCTGGGATCTGAACCTCAGAGCTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTC 238297 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATC-GGGTGTCA 40079 || || || || || | || ||| || || || | ||||| | ||| Sbjct 238296 TGATGCTGCGAAGAAAGCGAGAACGTGTGAGATGAAGAATCGCTCGTCATCATTGAGTC- 238238 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 || ||||| || | | ||| || || | ||| | || || || ||||| ||||| | Sbjct 238237 GCTTGTTCCAATCGTGCAGATCCTTGGACAGATCAATCTCCTCTGCGGTCCAGAACGATG 238178 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 |||| ||||| |||||||| | ||| || Sbjct 238177 CCTCGGCCTTCTTGTACATCTGCCAGAT 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904584097240