Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 190 3e-43 seq31 107 2e-18 >seq8 Length=557162 Score = 190 bits (210), Expect = 3e-43 Identities = 894/1398 (64%), Gaps = 39/1398 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||||| || ||||| ||||| |||| ||| |||| ||| || Sbjct 459235 GTAGATGTTGCTCGTGTATGGCTCGAAGCACTCATTGAAGCCCATGATCTGTGAGGTCGA 459294 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||| | | || ||| || | ||| | || ||| | Sbjct 459295 TGCGGTAGGCATAGGTGCAACAAGCAGCGAGTTGCGCACACCATGCTGAGCGATCTTGGC 459354 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCAC-CTT--CCCACATGTCAAACTG 110883 |||||| | ||||||| | || | || | ||| |||||||||| |||| Sbjct 459355 CTTGAGCTCGGCCCAGTCCCAC---AGGTCTGTAGGAGTCTTGCCCCACATGTCGTACTG 459411 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 |||| | ||||| || | ||||| |||| | || || || | ||| | || || Sbjct 459412 AAGCTCGCCTTGCGATACTGGAGAGCCCTGGTAAGTCTCGTATGGACCAAGCTTCTCGGC 459471 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || ||||| || | || || || ||||| || |||||| | || | Sbjct 459472 AAGCTCGCACGAAGCCTCAAGAGCGGCATGGTAGATGGTCTCGAAGATATGGATGTTGAG 459531 Query 111004 CTCCTTGGCTTCATCTGAATCAAATG-CGTA--GCGGCACAAAATAAATACATCCGCGAG 111060 ||||||||| || || || |||| | || | || ||| | | |||| || || Sbjct 459532 CTCCTTGGCCTCGGGCGAGTCGAATGGCATACGGAGGGCCAAGAAAG---CATCAGCAAG 459588 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-A 111119 ||| | ||||||| ||||||||||| ||| || | || ||| || || ||| | Sbjct 459589 ACCGTTGACACCCAGACCAATAGGTCGGTGACGGAAGTTGCTCTTCCGTGCC-TCTGGTA 459647 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | || ||| | || | || ||| ||| | || || |||| ||| |||| | Sbjct 459648 CTGGGTAATAGTTGATCTCGATGGTCTTGTTCAAGTTGCGAGTGACAACCTTGGTGACCT 459707 Query 111180 CATGAAGTTTTTCATAATC-AAAAGTGCGAGTCTCTTCATTGACA---TACTTTGGAAGG 111235 | ||||| || | | || |||| || | ||| || || || | || || Sbjct 459708 CGTGAAGCTTCTTGAAGTCGAAAACCTCG----TTTTCGATGTCAACGTATGTCGGCAGA 459763 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || ||||| ||||| ||||| |||||| | | |||||| | ||||| Sbjct 459764 GCAAGCGAGGCCAAGTTGCAGACAGCGACCTCATCTGGTGCAGAGTACTCCATGATTTCA 459823 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || ||||| ||||| || || || || | ||||| ||||| ||||| |||| Sbjct 459824 GTGCACAAGTTCGAACTTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 459883 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||||| || ||| | || || || ||||| ||||| | || ||||| || | | Sbjct 459884 GCATCCTTGTACAGGATGAAAGGTGTGCCAGTCTCGGTCTGGGCTTCAAGAATTGCATAC 459943 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGT 111473 || | | || | ||| | || | | | ||| | ||| | | ||| || || Sbjct 459944 CAGATCTTCTG-GGCGCGAACGGTCTC-ACGACCCTTACCTTCTCTCTCATATCGCTCGT 460001 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 |||| | | ||||| ||||| |||| || | || || || | || || | Sbjct 460002 AGAGCTCCTTGAACTCATCACCGTAGACGTCAGACAAGCCAGGGCACTCATTGGGGCACA 460061 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 || | ||| || | ||| || |||| |||||| || ||||| ||||| |||| Sbjct 460062 TCAGGGTCCAAGTGCCGTTCTGCTCGACGCGCTCCATGAAGAGATCTGGGATCCAAAGGG 460121 Query 111594 ATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | |||||||| | | ||| || | || || | || ||||| || | || | | Sbjct 460122 CGTAGAAGAGATCGCGAGCACGGA-CTTCCTCCTTGCCGTGGTTCTTACGGAGGTCCATG 460180 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712 |||| | || ||| ||||||||||||||||| |||| || | | || | | ||| Sbjct 460181 AACTGAAAGACATCGGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACC---TGGGCGC 460237 Query 111713 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 ||| | || | || ||||| || ||| ||| | || | | ||| || | | Sbjct 460238 TTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACTCTCAACATCGGTACA 460297 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 | ||| | ||| || || || || | ||| || | | || | | || || Sbjct 460298 AGACCGTTGGATGTGCCGTTGGTGCCACCGATATAGGAACCAGTAGCACGGATATTGTGA 460357 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 | |||| |||||||| ||||| ||| ||||| ||||| | | || || | Sbjct 460358 ACATGCAGACCAATACCGCCAGCGTTCTTGGAGATCATAGCACATGTCTTGAGGGTGTCG 460417 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 ||||| |||| ||| ||| ||||| |||| || | |||||| | || ||| | | Sbjct 460418 TAGATGCCGTCGATGCTGTCATCCTTCATGGCAATCAAGAAGCAGGAAGCCAACTGGGCT 460477 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005 ||||| ||||| |||| || ||||| | || || |||| ||| | | ||||| Sbjct 460478 TGCGGTGTTCCAGCGCTGAAAAGCGTTGGCGACGCATGTGTGAA-GTACTTCAGCGACAT 460536 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | || ||||||||| | ||| ||||| ||||| |||||||| |||| || || || Sbjct 460537 GTAGTTGTATGTCTCAATCGCAGCCTCAATATCTTCTCCGTGGATACCGACCGCCACACG 460596 Query 112066 CATGAACATGTACTGTGG 112083 ||||| ||| | ||| || Sbjct 460597 CATGATCATCTGCTGCGG 460614 >seq31 Length=267444 Score = 107 bits (118), Expect = 2e-18 Identities = 287/436 (66%), Gaps = 12/436 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 238991 TACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGTGAGATGTTCTCCATG 238932 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| ||||| || | ||||| | | | | || || | | || | Sbjct 238931 AAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTG-----CCGAGTGCCAAAAGCA 238877 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 | || || | ||| |||| ||||| | ||||| ||| |||||| |||| || | Sbjct 238876 GGCGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTTCATGCCGAGAAGCT 238817 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 | ||||| || || || || |||| | | |||||| |||| ||||| | |||| Sbjct 238816 TGCATGGCAGAGCATCTGTGAGGAACTCCTGCTCAATAGCAACTGCCTCAACGATGATGC 238757 Query 122606 CGTGGATA-GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 || | | || | | ||| | | || ||| | ||| || ||| || Sbjct 238756 TCTGCACAAGTGCCTGATCTGGCT-TGTTCTTCAAGTGCGAGAACAGGAGACAGGCGAAG 238698 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||| | ||||||||| ||||| ||||| || || ||||| || || | |||| Sbjct 238697 TCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAATGTAAGGCCAGCCATG 238638 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||||| ||| | || ||| ||| || ||||| |||||||||||||| Sbjct 238637 AGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAAAAGAAGATACCCTCA 238578 Query 122785 ACACACGCAAACGCAA 122800 ||| || || |||| Sbjct 238577 ACAGCGGCGAAAGCAA 238562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028145453600