Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 214 2e-50 seq31 123 3e-23 seq33 111 2e-19 >seq8 Length=557162 Score = 214 bits (236), Expect = 2e-50 Identities = 518/772 (67%), Gaps = 22/772 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| || || | ||||||||||| || || | | || || |||||| ||| Sbjct 460601 TCATGCGTGTGGCGGTCGGTATCCACGGAGAAGATATTGAGGC-TGCGATTGAGACATAC 460543 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 ||| ||| | |||||||| || || || ||||||| || |||| |||||| || Sbjct 460542 AACTACATGTCGCTGAAGTACTTCACACATGCGTCGCCAACGCTTTTCAGCGCTGGAACA 460483 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || | ||| || | ||||||| || | || |||||||||||| ||||||||| Sbjct 460482 CCGCAAGCCCAGTTGGCTTCCTGCTTCTTGATTGCCATGAAGGATGACAGCATCGACGGC 460423 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| ||||| ||||||||| | || ||||| ||| | Sbjct 460422 ATCTACGACACCCTCAAGACATGTGCTATGATCTCCAAGAACGCTGGCGGTATTGGTCTG 460363 Query 53432 CACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || || || ||||||| | || | ||| || || |||||| || | Sbjct 460362 CA-TGTTCACAATATCCGTGCTACTGGTTCCTATATCGGTGGCACCAACGGCACATCCAA 460304 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || | || || ||| | | || | ||||||||| || || |||||| |||||||||| Sbjct 460303 CGGTCTTGTACCGATGTTGAGAGTGTACAACAACACTGCTCGCTACGTCGACCAGGGTGG 460244 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || | || ||||||||||| ||||| ||||||||||| | | | Sbjct 460243 CAACAAGCGCCCAGGTGCCTTTGCCATCTACCTTGAGCCATGGCACGCCGATGTCTTTCA 460184 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-T 53668 ||| | || || ||| ||| || || | || || | || ||| || || || || | Sbjct 460183 GTTCATGGACCTCCGTAAGAACCACGGCAAGGAGGAAGTCCG-TGCTCGCGATCTCTTCT 460125 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || || ||||| || || ||||||||| | || ||| || ||| ||| | Sbjct 460124 AC-GCCCTTTGGATCCCAGATCTCTTCATGGAGCGCGTCGAGCAGAACGGCACTTGGACC 460066 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 ||||||||||| || |||||||| ||| | | ||||||||||| ||||| || ||| Sbjct 460065 CTGATGTGCCCCAATGAGTGCCCTGGCTTGTCTGACGTCTACGGTGATGAGTTCAAGGAG 460006 Query 53789 ATGTATCGGACG-TA------CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCG 53841 | || || || || | || | |||| || ||| || || | Sbjct 460005 CTCTA-CGAGCGATATGAGAGAGAAGGTAAGGGTCG------TGAGACCGTTCGCGCCCA 459953 Query 53842 TGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTA 53901 || | ||| ||||||| || | |||| ||||| || || || | ||| || Sbjct 459952 GAAGATCTGGTATGCAATTCTTGAAGCCCAGACCGAGACTGGCACACCTTTCATCCTGTA 459893 Query 53902 CAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||||||| | | |||| |||||||||||||||||| | ||| ||||||| Sbjct 459892 CAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCAAA 459841 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| || || || ||||| ||||| ||||| | |||||||||||| | Sbjct 459330 CGCAACTCGCTGCTTGTTGCACCTATGCCTACCGCATCGACCTCACAGATCATGGGCTTC 459271 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || ||| |||||||| ||||||| |||||||||| Sbjct 459270 AATGAGTGCTTCGAGCCATACACGAGCAACATCTAC 459235 >seq31 Length=267444 Score = 123 bits (136), Expect = 3e-23 Identities = 531/822 (65%), Gaps = 32/822 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| || || ||||||||||| || ||| |||||||||||||| Sbjct 238991 TACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGTGAGATGTTCTCCATG 238932 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCC---ATGAGG 74579 ||||||| ||||| | || ||| | ||| | || | ||||| | ||| Sbjct 238931 AAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGA---GTGCCAAAAGCAGG 238875 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || ||||| || | ||||| || | ||| || || | |||||||| || ||| Sbjct 238874 CGGTCGGCCACGAACTCGATGTATTGTGACATGAGACCAGCGTTCATGCCGAGAAGCTTG 238815 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAA--GCC-CATTGGACAATC 74696 || ||||| || || |||| ||||| ||| | | |||| ||| || | | | Sbjct 238814 CATGGCAGAGCATCTGTGAGGAACTCCTGCTCAA--TAGCAACTGCCTCAACGATGATGC 238757 Query 74697 T-TGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGCAA 74754 | || | || || || ||| | | ||| ||| ||| | | | | || ||| | Sbjct 238756 TCTGCACAAGTGCCTGATCTGG--CTTGTTCTTCAAGTGCGAGAACAGGAGACA-GGCGA 238700 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| || ||||| | | || | || ||||| || | |||||||| || Sbjct 238699 AGTCTGTGTGCATACCCTCATCACGGGAGATAAGCTCGTTCGAGAATGTAAGGCCAGCCA 238640 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||||| ||| |||||||| ||||||||| |||||||| || | Sbjct 238639 TGAGACCACGCTTCTTCAGCCAGAAGATGGCGGCGAAGGAACCGGAAAAGAAGATACCCT 238580 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAG 74931 | ||| || || || || | || | ||||| | | | | | | ||||| Sbjct 238579 CAACAGCGGCGAAAGCAACCAATCGGAGGGCGAATGTGGAATTTTTGTCCGAGATCCATC 238520 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGG 74990 | ||||| ||||| ||| | | ||| |||| ||||||| || | ||| || Sbjct 238519 GCAACGCCCAGTCAGC-CTTCTTACGGATGCACGGGATGTTATCGATGGCGTTGAACAGA 238461 Query 74991 CTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 || ||| || | || || ||| ||||||| | || ||||| || || | Sbjct 238460 TATG--TTCGCTGCTTTGGCTCGCTGATATATGTGTCAATAAGGAGGGAGTATGTTTCGG 238403 Query 75049 AATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 | || || ||| | | |||| | | ||||| | || ||||||| ||||| | Sbjct 238402 AGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGTGCCTCTGGGATCTGAA 238343 Query 75109 CATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 | || |||| || | | | ||||| |||| |||||||| || || ||||| Sbjct 238342 CCTCAGAGCTGAAGCGCTC--GACAAGGTTCTCGTTGACAATGCCGTCTGATGCTGCGAA 238285 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATC 75223 ||||| || || | ||| ||| ||||| || ||| ||||| |||| |||||| Sbjct 238284 GAAAGCGAGAACGTGTGAGATGAAGAATCGCTCGTCATCATTGAGTCGCTTGTTCCAATC 238225 Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | ||| ||| | || |||||||||||| | |||||||| Sbjct 238224 GTGCAGATCCTTGGACAGATCAATCTCCTCTGCGGTCCAGAA 238183 >seq33 Length=264817 Score = 111 bits (122), Expect = 2e-19 Identities = 189/268 (71%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||| ||||| ||||| || || || || ||||| |||| || || ||||| | | Sbjct 137658 CCAGTTCCAATACCGTCTGCCCCGTTGATGAGGATCATGGGCAAGATCGGCACGTACATC 137599 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || ||||| ||| ||| | |||| || | ||| ||| | Sbjct 137598 TCCGGCTCGATGGTTTTGCCATCGTCGGTGTTGTAGGTAAGCAGAGCTTCGTCGCTCTGG 137539 Query 117272 TCGAATATGT-TCTTGGTCCAC-GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 | || ||| ||||| | | || | || | ||| |||||||||||| || || | Sbjct 137538 TGAAAAATGGCTCTTG--CAAGTGGCGACAGCCTCGTGTAAATGTAACGAGGACTGGCCG 137481 Query 117330 CATCCTTGCCACCA-GCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 | || || ||||| |||| ||| | ||||| | ||||| ||||| | | ||||| | Sbjct 137480 CGTCGTTACCACCTTGCAA-ACGGGAGCCGAAGTTACCACTTGGCTCGAGAATGTTCATG 137422 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 ||||| | |||||||||||||||||||| Sbjct 137421 TTGTTAGAGCCCACAAAGTTTTGAGCCA 137394 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG-CTC 119133 ||| | | ||||| |||||||||||||||||||| ||||||||||| || | || ||| Sbjct 135612 CTGTAGATGTTGGTGAGCTTGGCACCGTATCCGTTGCGACCACCGGTGAC-CTTTGCCTC 135554 Query 119134 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||| ||||||||| ||| | || || || || || | ||| ||||| Sbjct 135553 TTCGTCGTCGTAGTTGGACGAGGTGAGCAGATGACCGAAAATCATCTCCGGGAT 135500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212641461800