Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 102 5e-17 seq64 89.7 3e-13 seq12 89.7 3e-13 >seq25 Length=313491 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||||||||| || || || |||||| || ||||| || ||||||||||| || Sbjct 101245 AGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGTGTCCGG 101304 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| || || || | |||||| ||||| || || | |||||| Sbjct 101305 CCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCC 101364 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | |||||| | || |||||| ||||| || | || Sbjct 101365 TTATCT-TGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCCACCTCGAGTGT 101423 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || |||||||| || |||||| Sbjct 101424 AATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463 >seq64 Length=168546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 34511 TGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGG 34570 ||| | |||| |||||||| || || || || || || | |||||||| || || |||| Sbjct 20802 TGCGCACCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGG 20743 Query 34571 CAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | || || |||||||| |||||||| || | |||||||||||| |||||| Sbjct 20742 CGAAGATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTT 20691 >seq12 Length=397188 Score = 89.7 bits (98), Expect = 3e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| ||||||||||| || ||||| || || || || || || Sbjct 53185 AGACGGAGGACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 53244 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | ||||| |||||||| || | |||||| Sbjct 53245 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATCCCCTCC 53304 Query 34609 TTGTCTGTG 34617 ||||||||| Sbjct 53305 TTGTCTGTG 53313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727716638403