Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq25 176 9e-39
seq64 141 2e-28
seq31 120 6e-22
seq12 114 3e-20
>seq25
Length=313491
Score = 176 bits (194), Expect = 9e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || || || |||| |||| ||| || ||||||||||||||
Sbjct 101464 CCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTG 101523
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || ||||| ||||||| || || ||||| ||
Sbjct 101524 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 101583
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || ||| | || || |||||||| | || ||
Sbjct 101584 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGACGACTCAACC 101643
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 101644 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| | |||| || | || || || |||||||||||||| | |
Sbjct 101236 CCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAA 101295
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| || || || || || ||||| | ||| || |||||| ||
Sbjct 101296 AGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 101355
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||| ||||| ||||| | || ||| | ||||||||||| |||| ||| ||
Sbjct 101356 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCCACC 101415
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||| || || | ||||| || ||||| |||||
Sbjct 101416 TCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCAT 101462
Score = 154 bits (170), Expect = 3e-32
Identities = 160/207 (77%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| ||||| || || || | ||||| || || || |||||||||||
Sbjct 101691 ACCACCACGCAGACGAAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 101750
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || || |||||||| || || ||||| ||
Sbjct 101751 GAGGGTGCGACCATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCCGGAGG 101810
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| |||||| ||||| ||||| | || || ||||| |||| || |
Sbjct 101811 AATACCCTCCTTGTCCTGGATC-TTGCTCTTTACATTGTCAATCGTGTCAGAAGACTCCA 101869
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077
| ||||| ||||| ||||| || ||||
Sbjct 101870 CCTCGAGGGTGATTGTCTTGCCAGTCA 101896
>seq64
Length=168546
Score = 141 bits (156), Expect = 2e-28
Identities = 141/180 (78%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||| | || ||||||||||| || || || || ||||| ||||||
Sbjct 20794 TTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATC 20735
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATC 283030
||||| || ||||| ||||| |||||||||||||||||||| ||| || || | ||
Sbjct 20734 AAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTC 20676
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| || ||||||||||| ||||| ||||| || || | ||||| |||||
Sbjct 20675 GATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 20616
>seq31
Length=267444
Score = 120 bits (132), Expect = 6e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 230177 AGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAA 230236
|||||| | ||| |||||||| | || ||| | || ||| ||| ||||||||||
Sbjct 238773 AGTTGCTATTGAGCAGGAGTTCCTCACAGATGCTCTGCCATGCAAGCTTCTCGGCATGAA 238832
Query 230237 TGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG 230296
|||| ||||||| ||||| ||||| ||||| || || || | | |||| || ||
Sbjct 238833 CGCTGGTCTCATGTCACAATACATCGAGTTCGTGGCCGACCGCCTGCTTTTGGCACTCGG 238892
Query 230297 GTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCA 230356
|| |||| | || ||| ||| ||||| |||| || |||||| ||| |||||
Sbjct 238893 CAACAAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATGGAGAACATCTCACTGGG 238952
Query 230357 GGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
|| || || ||||||||||| |||||||| |||| || |||| | | |||||
Sbjct 238953 CGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACCAAAAGGCGGGTGT 239006
>seq12
Length=397188
Score = 114 bits (126), Expect = 3e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || ||||| | ||||| || || |||||||||||||| |
Sbjct 53175 ACCACCACGCAGACGGAGGACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 53234
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| ||||||| || || ||||| ||
Sbjct 53235 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGG 53294
Query 282992 AATACCCTCCTTGTCT 283007
|| ||||||||||||
Sbjct 53295 GATCCCCTCCTTGTCT 53310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046732615029114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |