Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09-
23] 491 sequences; 33,245,410 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq25 140 3e-28
seq12 134 1e-26
seq64 120 3e-22
seq269 96.9 3e-15
>seq25
Length=313491
Score = 140 bits (154), Expect = 3e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||| || || |||||| |||||||| ||||| ||||||
Sbjct 101463 GCCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCT 101522
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || ||||||||||||||||| ||||||||||| ||||| | ||
Sbjct 101523 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGG 101582
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || | | ||| | | | ||||| |||||| |
Sbjct 101583 GATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGACGACTCAA 101641
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || |||| ||||| ||||| ||||||||
Sbjct 101642 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || |||||||||||||||||||| |||||| |
Sbjct 101692 CCACCACGCAGACGAAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTG 101751
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| ||||| |||| |||||| ||||||| |||
Sbjct 101752 AGGGTGCGACCATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 101811
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 101812 ATACCCTCCTTGTCCTGGATCTT 101834
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || ||||||| ||||| || ||||||||| ||||| ||||| ||
Sbjct 101235 GCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGA 101294
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 101295 AAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 101354
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||| | | ||| | || | | |||| | | | |||||| || ||||
Sbjct 101355 GATGCCCTCCTTAT-CTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCCA 101413
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || || || ||||| || || || ||||||
Sbjct 101414 CCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463
>seq12
Length=397188
Score = 134 bits (148), Expect = 1e-26
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || |||||||||||||| ||||| ||||| |||
Sbjct 53176 CCACCACGCAGACGGAGGACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 53235
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 53236 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 53295
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||||||
Sbjct 53296 ATCCCCTCCTTGTC 53309
>seq64
Length=168546
Score = 120 bits (132), Expect = 3e-22
Identities = 141/189 (75%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726
||| | ||||||||||||| ||||| || || ||||| | || || |||||||| ||||
Sbjct 20802 TGCGCACCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGG 20743
Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784
|||| |||| ||||| ||||||| |||| || ||||||||| ||| || |||
Sbjct 20742 CGAAGATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA 20683
Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844
|| | || | |||||||| ||||| || || | ||| || || || || || || ||
Sbjct 20682 CATTGTCG--ATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGT 20625
Query 41845 CTTTACGAA 41853
|||||||||
Sbjct 20624 CTTTACGAA 20616
>seq269
Length=9048
Score = 96.9 bits (106), Expect = 3e-15
Identities = 80/97 (82%), Gaps = 3/97 (3%)
Strand=Plus/Minus
Query 41677 CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC---GAGCTGCTTGCCGGCGAATAT 41733
||| ||||| ||||||||||||||||| ||||| || ||||||||||| |||||| ||
Sbjct 5531 CTGGATGTTGTAGTCGGAGAGGGTGCGGTCGTCTTCCTCGAGCTGCTTGCTGGCGAAAAT 5472
Query 41734 CAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|| |||||| ||||| | |||| || |||||||||
Sbjct 5471 CAAGCGCTGCTGGTCTGGTGGAATTCTTTCCTTGTCC 5435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301162609200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |