Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20arachidis_20[genbank_20GCA_5F001297265.1_202015-09- 23] 491 sequences; 33,245,410 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq25 140 3e-28 seq12 134 1e-26 seq64 120 3e-22 seq269 96.9 3e-15 >seq25 Length=313491 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || |||||| |||||||| ||||| |||||| Sbjct 101463 GCCACCACGGAGGCGGAGCACAAGGTGTAGCGTGGATTCCTTCTGGATGTTGTAGTCGCT 101522 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 101523 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGTGG 101582 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | | ||| | | | ||||| |||||| | Sbjct 101583 GATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGACGACTCAA 101641 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 101642 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 101690 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || |||||||||||||||||||| |||||| | Sbjct 101692 CCACCACGCAGACGAAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTG 101751 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| |||| |||||| ||||||| ||| Sbjct 101752 AGGGTGCGACCATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 101811 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 101812 ATACCCTCCTTGTCCTGGATCTT 101834 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || ||||||| ||||| || ||||||||| ||||| ||||| || Sbjct 101235 GCCACCACGCAGGCGCAACACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGA 101294 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 101295 AAGTGTCCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 101354 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| | | ||| | || | | |||| | | | |||||| || |||| Sbjct 101355 GATGCCCTCCTTAT-CTTGAATCTTCGACTTAACGTTGTCGATAGTGTCTGAAGATTCCA 101413 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| || || || |||||| Sbjct 101414 CCTCGAGTGTAATTGTCTTGCCGGTAAGTGTCTTCACAAATATTTGCATG 101463 >seq12 Length=397188 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || |||||||||||||| ||||| ||||| ||| Sbjct 53176 CCACCACGCAGACGGAGGACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 53235 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| ||||||||||| ||||||| || Sbjct 53236 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 53295 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 53296 ATCCCCTCCTTGTC 53309 >seq64 Length=168546 Score = 120 bits (132), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 ||| | ||||||||||||| ||||| || || ||||| | || || |||||||| |||| Sbjct 20802 TGCGCACCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCTTCAAGCTGCTTTCCGG 20743 Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784 |||| |||| ||||| ||||||| |||| || ||||||||| ||| || ||| Sbjct 20742 CGAAGATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA 20683 Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 || | || | |||||||| ||||| || || | ||| || || || || || || || Sbjct 20682 CATTGTCG--ATGGTGTCGCTAGACTCGACTTCGAGCGTGATGGTCTTGCCAGTGAGGGT 20625 Query 41845 CTTTACGAA 41853 ||||||||| Sbjct 20624 CTTTACGAA 20616 >seq269 Length=9048 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/97 (82%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 41677 CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC---GAGCTGCTTGCCGGCGAATAT 41733 ||| ||||| ||||||||||||||||| ||||| || ||||||||||| |||||| || Sbjct 5531 CTGGATGTTGTAGTCGGAGAGGGTGCGGTCGTCTTCCTCGAGCTGCTTGCTGGCGAAAAT 5472 Query 41734 CAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||| ||||| | |||| || ||||||||| Sbjct 5471 CAAGCGCTGCTGGTCTGGTGGAATTCTTTCCTTGTCC 5435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301162609200