Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2106 266 3e-66 seq1950 118 1e-21 seq2084 98.7 1e-15 seq1821 96.9 4e-15 >seq2106 Length=142898 Score = 266 bits (294), Expect = 3e-66 Identities = 542/791 (69%), Gaps = 13/791 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || ||||| |||||||| | |||||| | || ||| Sbjct 23206 ATATGGCAGATGTACAAGAAAGCTGAAGCGTCCTTCTGGACTGCTGAGGAGATTGATCTG 23265 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | | | |||||||| ||||||| | |||||| Sbjct 23266 TCCAAGGACCTTCACGACTGGAACAAGAGATTGAACGATGACGAGCGATACTTCATCTCA 23325 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| || || || ||||||||||| ||||| |||||| Sbjct 23326 CACGTCCTTGCTTTCTTCGCCGCATCTGATGGAATTGTCAACGAGAACCTGGTTGAGCGT 23385 Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||| || || ||| | | || || || ||||||||||| || |||||| || Sbjct 23386 TTC-AGCAGTGAAGTACAGATACCTGAAGCACGATGCTTCTACGGATTCCAGATCATGAT 23444 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | |||||||||| || || || |||||||| ||| | || | | Sbjct 23445 GGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGACACCTACATCAGCGAACCCAA 23504 Query 116932 GGAGAAGCTC-CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | || | || | | || ||||||||||| | || || || || ||||||| | Sbjct 23505 GCAG-CGATCATATCTCTTCAACGCCATCGATAACATCCCATGTATCCGTAAGAAGGCTG 23563 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCC 117049 | ||||| |||| |||||| | | || ||| || |||| | | || ||| | || Sbjct 23564 ACTGGGCATTGCGATGGATCTCTGACA-AGAATTCGACCTTTGCCTGCCGACTGATCGCT 23622 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| || |||||||| ||||||| || || ||||| |||| || ||| | ||| Sbjct 23623 TTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCTGGTTGAAG 23682 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||| |||| || || ||| ||||| | ||||| | |||||||| Sbjct 23683 AAGCGTGGTCTCATGGCCGGTCTCACGTTCTCGAACGAATTGATCTCGCGTGACGAGGGC 23742 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| ||||| || || |||||||| || | | | ||| ||| | Sbjct 23743 ATGCACACAGACTTCGCGTGCCTGCTGTTCTCCCACCTCAAGAACAAGCCGGACGCATCA 23802 Query 117230 CGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | ||| ||| | ||| || ||| || ||||| || ||||| |||||||| || || Sbjct 23803 CTCGTGCAGAG-CATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGC 23861 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 ||| || || || || || | || ||| || | |||| || ||||||||||| | Sbjct 23862 GCTCCCCGTCATGCTCCTCGGCATGAA-TGCCAAGCTCATGTGCCAGTACATCGAGTTTG 23920 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||| ||| | ||| || | | || | | | ||| ||||||| | ||||||| Sbjct 23921 TCGCAGACCGTCTGTTGTTGGCACTCGGCAACCAGAAGTTCTACAACGCCACCAACCCAT 23980 Query 117408 TGGACTTTATG 117418 | ||||| ||| Sbjct 23981 TCGACTTCATG 23991 >seq1950 Length=170036 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC-----GAAG 40744 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| Sbjct 63480 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTGAAGTGGAAT 63539 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | | | ||||| || |||| ||||| ||||||||||| | | Sbjct 63540 CATCAGACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAG 63599 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || ||||||| ||| || || ||||| || |||| || || || | ||||| Sbjct 63600 ACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGGACACTGAGCGACT 63659 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||||| ||| ||||| Sbjct 63660 ACAACATCCAGAAGGAGAGCACTCTGCA 63687 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||||||| |||| || || | | Sbjct 63252 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCA 63311 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| || || | |||||| Sbjct 63312 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAG 63371 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| || || || || | || ||||| ||| |||||| Sbjct 63372 CAGCGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAAC 63431 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| ||||| || || Sbjct 63432 ATCCAGAAGGAGTCCACTCTGCACCTTGT 63460 >seq2084 Length=280932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| |||||||||| || | |||| ||| ||||| ||||| || Sbjct 181183 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 181242 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| ||||||||||||||||||||| | || || || || || | Sbjct 181243 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTC 181302 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 181303 CGCCTGCGTGGTGG 181316 >seq1821 Length=46945 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 19120 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 19179 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| ||||| |||| ||||| || || Sbjct 19180 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAGCGTCTG 19239 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||| |||| || | ||||| | |||||||||||||| ||| Sbjct 19240 ATCTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAAAG 19299 Query 40879 G 40879 | Sbjct 19300 G 19300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202287929760