Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 120 2e-22
>seq1950
Length=170036
Score = 120 bits (132), Expect = 2e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| ||| ||||||||| |||||||| ||| ||| || | || || |||||
Sbjct 63455 GTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTG 63396
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| ||||| ||||| |||||||| || | ||||||||||||| ||| ||
Sbjct 63395 CTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCCTGAATCTT 63336
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| | ||| ||||| | ||| || ||||| || ||
Sbjct 63335 GGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGT 63276
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| ||||||||||||||
Sbjct 63275 GAGGGTCTTGACAAAGATTTGCAT 63252
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 9/216 (4%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| |||||||||||||| |||||||||||| ||||| || |||| ||
Sbjct 63693 ACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCCTCG 63634
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | ||||| ||||| || || | ||||||||||| |
Sbjct 63633 AGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGA 63574
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTC-------CCCACCCTCCACCTCCACGGTAAT 45300
|| || ||| || | | | |||| ||| || ||| || | || ||
Sbjct 63573 ATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCA--CTTCACTTCAAGTGTGAT 63516
Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| || || ||||| || ||||| |||||
Sbjct 63515 AGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395062555865146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |