Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1950 120 2e-22 >seq1950 Length=170036 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| |||||||| ||| ||| || | || || ||||| Sbjct 63455 GTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTG 63396 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||| ||||| |||||||| || | ||||||||||||| ||| || Sbjct 63395 CTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCCTGAATCTT 63336 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||| | ||| || ||||| || || Sbjct 63335 GGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGT 63276 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 63275 GAGGGTCTTGACAAAGATTTGCAT 63252 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| |||||||||||||| |||||||||||| ||||| || |||| || Sbjct 63693 ACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCCTCG 63634 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | ||||||||||| | Sbjct 63633 AGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGA 63574 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTC-------CCCACCCTCCACCTCCACGGTAAT 45300 || || ||| || | | | |||| ||| || ||| || | || || Sbjct 63573 ATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCA--CTTCACTTCAAGTGTGAT 63516 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || ||||| || ||||| ||||| Sbjct 63515 AGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062555865146