Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2106 136 4e-27 >seq2106 Length=142898 Score = 136 bits (150), Expect = 4e-27 Identities = 360/538 (67%), Gaps = 19/538 (4%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | || || | || ||| | || || |||| ||| ||||||||| ||||| Sbjct 23522 TCAACGCCATCGATAACATCCCATGTATCCGTAAGAAGGCTGACTGGGCATTGCGATGGA 23581 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || || | || | || |||||| || ||| |||| || ||| || || ||| Sbjct 23582 TCTCTGACAAGAATTCGACCTTTGCCTGCCGACTGATCGCTTTCGCTGCTGTCGAGGGTA 23641 Query 52652 TGtttttttC-GGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCC 52709 | || || || |||| ||| ||| | || || | | || || | ||| | | ||| | Sbjct 23642 TCTTCTTCTCTGGGTCGTTC-GCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGGC 23699 Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769 ||| |||||||| ||||| ||||| ||||| ||||| || ||||||||||| || || Sbjct 23700 CGGTCTCACGTTCTCGAACGAATTGATCTCGCGTGACGAGGGCATGCACACAGACTTCGC 23759 Query 52770 GTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCT--AGA 52826 ||| || | || | || | ||||| || | | | | | | | | ||| Sbjct 23760 GTGCCTGCTGTTCTCCCACC-----TCAAGAACAA--GCCGGACGCATCACTCGTGCAGA 23812 Query 52827 -CATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT 52885 ||| | ||||| |||| ||||| |||| || | || || || | ||||| Sbjct 23813 GCATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTCCCCGT-- 23870 Query 52886 CATTGT--TGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAG 52943 ||| | | |||||||| || | | |||||| |||||||||||||||| || ||| | Sbjct 23871 CATGCTCCTCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCAGACCG 23930 Query 52944 ACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTAT 53003 |||||| || ||||| | | ||| | ||| || || ||||| || || || Sbjct 23931 TCTGTTGTTGGCACTCGGCAACCAGAAGTTCTACAACGCCACCAACCCATTCGACTTCAT 23990 Query 53004 GAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | | ||||| || || | ||||| || ||||||||||||| ||||| || || ||| Sbjct 23991 GGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTAC 24048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047716699200