Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 104 5e-17
>seq1950
Length=170036
Score = 104 bits (114), Expect = 5e-17
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||||||||| || ||||| ||||| | ||||| || ||||| || ||
Sbjct 63220 GTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 63161
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
|| ||||| || | ||| ||||| ||||| ||||| || || ||||| ||| ||||| ||
Sbjct 63160 GCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGGATC-TTGCTCTT 63102
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || | || ||| | || ||||| || || || ||||| || ||
Sbjct 63101 CACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 63048
Score = 96.9 bits (106), Expect = 8e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| || || || || || || || | || ||
Sbjct 63464 AAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATC 63405
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || ||||| || || | | ||| || || || || || || || || ||
Sbjct 63404 CTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 63345
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || ||||| || | ||| || || || ||||| || || || ||
Sbjct 63344 CTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGT 63285
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| || || || ||||| || |||||
Sbjct 63284 CTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151359660481208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |