Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2106 114 1e-20 seq635 107 2e-18 seq2084 102 8e-17 seq1950 98.7 9e-16 >seq2106 Length=142898 Score = 114 bits (126), Expect = 1e-20 Identities = 283/422 (67%), Gaps = 7/422 (2%) Strand=Plus/Plus Query 46176 TGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGG 46234 ||| ||||| |||| || ||||| || || ||||||| | | || || | || Sbjct 23631 TGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCTGGTTGAAGAAGCGTGG 23690 Query 46235 GCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATA 46294 | ||||| |||| || ||||| ||||| |||| ||||| ||||||||| |||| | Sbjct 23691 TC-TCATGGCCGGTCTCACGTTCTCGAACGAATTGATCTCGCGTGACGAGGGCATGCACA 23749 Query 46295 CGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACAC-C 46353 | ||||| ||||| || || | | | | | | | |||||| | | | ||| | Sbjct 23750 CAGACTTCGCGTGCCTG--CTGTT-CTCCCACCTCAAGAACAAGCCGGA-CGCATCACTC 23805 Query 46354 GTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTG 46413 |||| |||||| || ||||| || || |||||| | || || | || | || || Sbjct 23806 GTGCAGAGCATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTC 23865 Query 46414 CCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCG 46473 |||| || || |||||||| || || |||||| | |||||||||||||| || Sbjct 23866 CCCGTCATGCTCCTCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCA 23925 Query 46474 GACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAG 46533 ||||| ||| | || || | | | |||| | |||| ||| ||||| || Sbjct 23926 GACCGTCTGTTGTTGGCACTCGGCAACCAGAAGTTCTACAACGCCACCAACCCATTCGAC 23985 Query 46534 TTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAG 46593 || ||| | ||||| || || | ||||| || || |||||||| ||||| || || || Sbjct 23986 TTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGAC 24045 Query 46594 TA 46595 || Sbjct 24046 TA 24047 >seq635 Length=74236 Score = 107 bits (118), Expect = 2e-18 Identities = 515/798 (65%), Gaps = 33/798 (4%) Strand=Plus/Plus Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTA 145764 ||| || || || || | ||| || || || | |||||| || |||||||| || ||| | Sbjct 35171 GATTGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTACAGGATGAA 35230 Query 145765 CGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTC--CTGCGCACGC 145822 || ||||||||||| ||| | ||| | ||| || ||| || ||| || || Sbjct 35231 AGGGCCGCCAGTCTCGGTCTGAGCCTCAAGGAT--GGCGTACCAAATCTTCTGTGCGCGG 35288 Query 145823 ACCTGCTGCTGGTAGCGGCCCT-CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 || || || ||||| | |||| ||||| | | ||| |||| || ||| | Sbjct 35289 ACAGTCTCACGGCCACGGCCTTGCTTC-TCGTACTGCTCGTAAAGCTTTTCGAACTCCTC 35347 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 |||||| ||||| || || || |||| ||||| ||||| || | |||| ||||||| Sbjct 35348 GCCGTAGACATCGGCGAGACCAGGGCACTCATTGGGGCACATGAGGGTCCATTCGCCGTT 35407 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | | || |||| ||| |||| |||||| | ||| || ||| | | | ||| || || Sbjct 35408 CTCCTCAACACGCTTCATGAACAGATCTGGGATCCAAAGTGCGAAGAAAAGGTCACGAGC 35467 Query 146002 TTTGCAATCCTC--AGCACCCATGTTT-CG--CTTCAAATTAAGCACACTATAGATGTCC 146056 | || || || || ||| || || || ||| || ||| || Sbjct 35468 GCGGACTTCTTCCTTGCCGTGATTTTTGCGGAGGTC-CATGAAGGCCA----AGACATCA 35522 Query 146057 GCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCC 146113 |||||||| || || | |||| ||| | || || || |||||||||||||| Sbjct 35523 GCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTATTGCCACCCTGGTCA 35582 Query 146114 ACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCG 146173 |||| || | ||||||| |||| || | |||||| | | ||| ||| | |||| Sbjct 35583 ACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAACCAGTCCGTTGGATGTGCCG 35642 Query 146174 TTCGTAGAGT---TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGA 146230 ||||| | | ||| | | ||| | ||| | || || || || | || | Sbjct 35643 TTCGT-GCCTCCGATATAC--GAGCCAGTCGCGCGGATGCGGTGGACGTTGAGACCAATG 35699 Query 146231 CCGCCGCCGTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAAT 146289 || || ||| ||| || || ||| | |||| ||| || |||||||| || || || Sbjct 35700 CCTCCTGCGTTCTTTGAGATCATGGCACAAGTC-TTGAGAGTGTCGTAGATACCCTCGAT 35758 Query 146290 GCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCC 146347 ||| || |||| ||| ||| || |||||| ||| | ||| || | ||||| || Sbjct 35759 GCTGTCATCCTTC--ATGTCGACCAAAAAGCATGAGGCGAGCTGAGCATTAGGCGTACCA 35816 Query 146348 GCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGT 146406 || ||| | ||| || ||||| || || | || | || ||| || || Sbjct 35817 GCGCTGAAAAGCGTGGGCGAAGCGTGTGTGAAGTACTTGTTGG-ACATGTAGTTGTAGGT 35875 Query 146407 TTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTG 146466 || |||||| | | ||| || || || || ||||| | ||| || ||||||| ||| || Sbjct 35876 CTCAATAGCGGCCTCAATATCCTCACCGTGGATGCCAACAGCCACACGCATGATCATCTG 35935 Query 146467 TTGGGGCCGCTCCGCCAC 146484 || || ||||| || || Sbjct 35936 CTGTGGTCGCTCTGCAAC 35953 >seq2084 Length=280932 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | |||||||||||| || |||||||| || Sbjct 181316 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 181257 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| || |||||||||||||| ||| Sbjct 181256 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 181197 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 181196 ATTCCCTCCTTGTC 181183 >seq1950 Length=170036 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||||||| | Sbjct 63478 CCACCACGGAGACGAAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGAC 63419 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || |||||||| ||| |||| || ||||||||||| || || Sbjct 63418 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGA 63359 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||| | Sbjct 63358 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 63299 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || || || || ||||| Sbjct 63298 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | || |||||| || |||||||| |||||| Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 63591 ATGCCCTCCTTGTC 63578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997306179840