Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 114 1e-20
seq635 107 2e-18
seq2084 102 8e-17
seq1950 98.7 9e-16
>seq2106
Length=142898
Score = 114 bits (126), Expect = 1e-20
Identities = 283/422 (67%), Gaps = 7/422 (2%)
Strand=Plus/Plus
Query 46176 TGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGG 46234
||| ||||| |||| || ||||| || || ||||||| | | || || | ||
Sbjct 23631 TGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCTGGTTGAAGAAGCGTGG 23690
Query 46235 GCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATA 46294
| ||||| |||| || ||||| ||||| |||| ||||| ||||||||| |||| |
Sbjct 23691 TC-TCATGGCCGGTCTCACGTTCTCGAACGAATTGATCTCGCGTGACGAGGGCATGCACA 23749
Query 46295 CGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACAC-C 46353
| ||||| ||||| || || | | | | | | | |||||| | | | ||| |
Sbjct 23750 CAGACTTCGCGTGCCTG--CTGTT-CTCCCACCTCAAGAACAAGCCGGA-CGCATCACTC 23805
Query 46354 GTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTG 46413
|||| |||||| || ||||| || || |||||| | || || | || | || ||
Sbjct 23806 GTGCAGAGCATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTC 23865
Query 46414 CCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCG 46473
|||| || || |||||||| || || |||||| | |||||||||||||| ||
Sbjct 23866 CCCGTCATGCTCCTCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCA 23925
Query 46474 GACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAG 46533
||||| ||| | || || | | | |||| | |||| ||| ||||| ||
Sbjct 23926 GACCGTCTGTTGTTGGCACTCGGCAACCAGAAGTTCTACAACGCCACCAACCCATTCGAC 23985
Query 46534 TTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAG 46593
|| ||| | ||||| || || | ||||| || || |||||||| ||||| || || ||
Sbjct 23986 TTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGAC 24045
Query 46594 TA 46595
||
Sbjct 24046 TA 24047
>seq635
Length=74236
Score = 107 bits (118), Expect = 2e-18
Identities = 515/798 (65%), Gaps = 33/798 (4%)
Strand=Plus/Plus
Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTA 145764
||| || || || || | ||| || || || | |||||| || |||||||| || ||| |
Sbjct 35171 GATTGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTACAGGATGAA 35230
Query 145765 CGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTC--CTGCGCACGC 145822
|| ||||||||||| ||| | ||| | ||| || ||| || ||| || ||
Sbjct 35231 AGGGCCGCCAGTCTCGGTCTGAGCCTCAAGGAT--GGCGTACCAAATCTTCTGTGCGCGG 35288
Query 145823 ACCTGCTGCTGGTAGCGGCCCT-CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881
|| || || ||||| | |||| ||||| | | ||| |||| || ||| |
Sbjct 35289 ACAGTCTCACGGCCACGGCCTTGCTTC-TCGTACTGCTCGTAAAGCTTTTCGAACTCCTC 35347
Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941
|||||| ||||| || || || |||| ||||| ||||| || | |||| |||||||
Sbjct 35348 GCCGTAGACATCGGCGAGACCAGGGCACTCATTGGGGCACATGAGGGTCCATTCGCCGTT 35407
Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001
| | || |||| ||| |||| |||||| | ||| || ||| | | | ||| || ||
Sbjct 35408 CTCCTCAACACGCTTCATGAACAGATCTGGGATCCAAAGTGCGAAGAAAAGGTCACGAGC 35467
Query 146002 TTTGCAATCCTC--AGCACCCATGTTT-CG--CTTCAAATTAAGCACACTATAGATGTCC 146056
| || || || || ||| || || || ||| || ||| ||
Sbjct 35468 GCGGACTTCTTCCTTGCCGTGATTTTTGCGGAGGTC-CATGAAGGCCA----AGACATCA 35522
Query 146057 GCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCC 146113
|||||||| || || | |||| ||| | || || || ||||||||||||||
Sbjct 35523 GCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCAGGGCGCTTATTGCCACCCTGGTCA 35582
Query 146114 ACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCG 146173
|||| || | ||||||| |||| || | |||||| | | ||| ||| | ||||
Sbjct 35583 ACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAACCAGTCCGTTGGATGTGCCG 35642
Query 146174 TTCGTAGAGT---TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGA 146230
||||| | | ||| | | ||| | ||| | || || || || | || |
Sbjct 35643 TTCGT-GCCTCCGATATAC--GAGCCAGTCGCGCGGATGCGGTGGACGTTGAGACCAATG 35699
Query 146231 CCGCCGCCGTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAAT 146289
|| || ||| ||| || || ||| | |||| ||| || |||||||| || || ||
Sbjct 35700 CCTCCTGCGTTCTTTGAGATCATGGCACAAGTC-TTGAGAGTGTCGTAGATACCCTCGAT 35758
Query 146290 GCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCC 146347
||| || |||| ||| ||| || |||||| ||| | ||| || | ||||| ||
Sbjct 35759 GCTGTCATCCTTC--ATGTCGACCAAAAAGCATGAGGCGAGCTGAGCATTAGGCGTACCA 35816
Query 146348 GCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGT 146406
|| ||| | ||| || ||||| || || | || | || ||| || ||
Sbjct 35817 GCGCTGAAAAGCGTGGGCGAAGCGTGTGTGAAGTACTTGTTGG-ACATGTAGTTGTAGGT 35875
Query 146407 TTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTG 146466
|| |||||| | | ||| || || || || ||||| | ||| || ||||||| ||| ||
Sbjct 35876 CTCAATAGCGGCCTCAATATCCTCACCGTGGATGCCAACAGCCACACGCATGATCATCTG 35935
Query 146467 TTGGGGCCGCTCCGCCAC 146484
|| || ||||| || ||
Sbjct 35936 CTGTGGTCGCTCTGCAAC 35953
>seq2084
Length=280932
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || || || | || | |||||||||||| || |||||||| ||
Sbjct 181316 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 181257
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || || ||||||||||| ||| |||| || |||||||||||||| |||
Sbjct 181256 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 181197
Query 131128 ATTCCTTCTTTGTC 131141
||||| || |||||
Sbjct 181196 ATTCCCTCCTTGTC 181183
>seq1950
Length=170036
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | || |||||||| || |||||||||||| |
Sbjct 63478 CCACCACGGAGACGAAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGAC 63419
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| || |||||||| ||| |||| || ||||||||||| || ||
Sbjct 63418 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGA 63359
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | || || | ||||| |
Sbjct 63358 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACC 63299
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || || || || || || |||||
Sbjct 63298 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| ||||| || || | || |||||| || |||||||| ||||||
Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| |||||||| || ||| |||| | ||||||||||| || |||
Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 63591 ATGCCCTCCTTGTC 63578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471997306179840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |